View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_6 (Length: 433)
Name: NF17546_low_6
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 3306873 - 3307281
Alignment:
| Q |
16 |
taaacaatacattaaggacacttattagtatttcccaaaatctaatttcgagaaattgacaaatttcaacatcaatgatatggaaaatattgaattgaaa |
115 |
Q |
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| T |
3306873 |
taaacaatacattaaggacacttattagtatttcccaaaatctaatttcgagaaattgacaaatttcaacatcaatgatatggaaaatattgaattgaaa |
3306972 |
T |
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| Q |
116 |
cttgatgatgaggttgaagttctactcttattgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccattattg |
215 |
Q |
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| T |
3306973 |
cttgatgatgaggttgaagttctactcttattgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccattattg |
3307072 |
T |
|
| Q |
216 |
cctttgaggtggtccaatcatccattagggccaaagagttaaccaagtttcaagacttgaaggtggaaggtacgtaatgggggaagactcaagtgtctcc |
315 |
Q |
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| T |
3307073 |
cctttgaggtggtccaatcatccattagggccaaagagttaaccaagtttcaagacttgaaggtggaaggtacgtaatgggggaagactcgagtgtctcc |
3307172 |
T |
|
| Q |
316 |
aaaggaagaagtgagtggaggaaattgtgctaaatcaaaatcaaaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttc |
415 |
Q |
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| T |
3307173 |
aaaggaagaagtgagtggaggaaattgtgctaaatcaaaatcaaaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttc |
3307272 |
T |
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| Q |
416 |
aagaataat |
424 |
Q |
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||||||||| |
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| T |
3307273 |
aagaataat |
3307281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 33834250 - 33834347
Alignment:
| Q |
138 |
tactcttattgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccat-tattgcctttgaggtggtccaatc |
234 |
Q |
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| T |
33834250 |
tactcttgttgagtttgttacccaaatcttttgaacatttcaaggatgcacttctttatgaaaatgaatccatatattaccttggaggtggtccaatc |
33834347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 33912803 - 33912900
Alignment:
| Q |
138 |
tactcttattgagttcgttgcctagatcttttgaacattttaaggatgcattcctttaaggaaaggaaaccat-tattgcctttgaggtggtccaatc |
234 |
Q |
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| T |
33912803 |
tactcttgttgagtttgttacccaaatcttttgaacatttcaaggatgcacttctttatgaaaatgaatccatatattaccttggaggtggtccaatc |
33912900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 16549593 - 16549635
Alignment:
| Q |
377 |
aagtataaatgcttcaattgtcacaagaccaataacttcaaga |
419 |
Q |
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| T |
16549593 |
aagtacaaatgcttcaattgtcacaagaccaatcacttcaaga |
16549635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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