View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_8 (Length: 398)
Name: NF17546_low_8
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 91 - 380
Target Start/End: Original strand, 12746747 - 12747048
Alignment:
| Q |
91 |
tttagattatcttttaacaaatttataacactatata--atggagatgtaccttttttaattggattttt-----------acccttcacttgaactatt |
177 |
Q |
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| T |
12746747 |
tttagattatcttttaacaaatctataacactatatataatggagatgcaccttttttaattggatttttctttcatttttacccttcacttgaactatt |
12746846 |
T |
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| Q |
178 |
t--aattgttcaatgttaccactcaccatccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactga |
275 |
Q |
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| T |
12746847 |
tttaattgttcaattttaccactcaccatccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacatgtaatactga |
12746946 |
T |
|
| Q |
276 |
tggagcatatttgggaaaccctggccaatcctcttgtgttggagttttcagaaactatgaaggtactgtattggttgctttgctgaaagtttgggtactc |
375 |
Q |
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| T |
12746947 |
tggagcatctttgggaaaccctggccaaacc---tgtgttggagttttcagaaactttgaaggtactgtattggttgctttgctgaaagtttgggtactc |
12747043 |
T |
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| Q |
376 |
ttact |
380 |
Q |
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||||| |
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| T |
12747044 |
ttact |
12747048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 30221604 - 30221775
Alignment:
| Q |
202 |
catccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactgatggagcatatttgggaaaccctggcc |
301 |
Q |
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| T |
30221604 |
catccaaacgctcctacaatcacagaagtaatctggaagcctcctttgtttcattgggttaagtgcaatacagatggagcatcattgggaaatcctggtt |
30221703 |
T |
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| Q |
302 |
aatcctcttgtgttggagttttcagaaactatgaaggta-ctgtattggttgctttgctgaaagtttgggta |
372 |
Q |
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| T |
30221704 |
tagcctcttgtggtggtgttttcagagattttgaaggtacctgtatgggttgttttgctgaaagtttaggta |
30221775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 17628285 - 17628114
Alignment:
| Q |
202 |
catccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactgatggagcatatttgggaaaccctggcc |
301 |
Q |
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|||||||| |||||||| ||||||||| | |||| ||||||||||||||| |||||||||| | ||||| |||||||||| |||||||| ||||| |
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| T |
17628285 |
catccaaacgctcctacaatcacagaagtaatctggaagcctcctttgtttcattgggttaagtgcaatacagatggagcatcattgggaaatcctggtt |
17628186 |
T |
|
| Q |
302 |
aatcctcttgtgttggagttttcagaaactatgaaggta-ctgtattggttgctttgctgaaagtttgggta |
372 |
Q |
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| ||||||||| ||| ||||||||| | | |||||||| |||||| ||||| |||||||||||||| |||| |
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| T |
17628185 |
tagcctcttgtggtggtgttttcagagattttgaaggtacctgtatgggttgttttgctgaaagtttaggta |
17628114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 32022002 - 32022173
Alignment:
| Q |
202 |
catccaaaggctcctactatcacagaaatcatctagaagcctcctttgttccattgggttacattgaatactgatggagcatatttgggaaaccctggcc |
301 |
Q |
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|||||||| |||||||| ||||||||| | |||| ||||||||||||||| |||||||||| | ||||| |||||||||| |||||||| ||||| |
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| T |
32022002 |
catccaaacgctcctacaatcacagaagtaatctggaagcctcctttgtttcattgggttaagtgcaatacagatggagcatcattgggaaatcctggtt |
32022101 |
T |
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| Q |
302 |
aatcctcttgtgttggagttttcagaaactatgaaggta-ctgtattggttgctttgctgaaagtttgggta |
372 |
Q |
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| ||||||||| ||| ||||||||| | | |||||||| |||||| ||||| |||||||||||||| |||| |
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| T |
32022102 |
tagcctcttgtggtggtgttttcagagattttgaaggtacctgtatgggttgttttgctgaaagtttaggta |
32022173 |
T |
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