View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17546_low_9 (Length: 391)
Name: NF17546_low_9
Description: NF17546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17546_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 45096272 - 45096634
Alignment:
| Q |
12 |
gagaagaaggagacaagaaatggcagagagattcatacaactttcggctatgatacctggcttgaagaaggttagttcctgcttcttctttaatattcta |
111 |
Q |
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| T |
45096272 |
gagaaaaaggagacaagaaatggcagagagattcatacaactttcggctatgatacctggcttgaagaaggttagttcctgcttcttctttaatattcta |
45096371 |
T |
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| Q |
112 |
tatatgcaccattctgttttttgtagatcaaaacatggaaatactaaatatagattaaacatgaggtttattatattaactttttataatggataggatt |
211 |
Q |
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| T |
45096372 |
tatatgcaccattctgttttttgtagatcaaaacatggaaatactaaatatagattaaacatgaggtttattatattaactttttataatggataggttt |
45096471 |
T |
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| Q |
212 |
ctttgttttatactgttttagtggatatgcnnnnnnngacaatatttaatggatatgcttaacaatgtaaaaatactttaccaagtaattcaattatatg |
311 |
Q |
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| T |
45096472 |
ctttgttttatactgttttagtggatatgctttttttgacaatatttaatggatatgcttaacaatgtaaaaatactttaccaagtaattcaattatatg |
45096571 |
T |
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| Q |
312 |
tgttatttagtagtgatacatggacaccatatcttaaaaaatgtgatgaattcaattgggtac |
374 |
Q |
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| T |
45096572 |
tgttatttagtagtgatacatggacaccatatcttaaaaaatgtgatgaattcaattgggtac |
45096634 |
T |
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