View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17547_high_4 (Length: 333)

Name: NF17547_high_4
Description: NF17547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17547_high_4
NF17547_high_4
[»] chr3 (9 HSPs)
chr3 (1-190)||(16218711-16218899)
chr3 (6-190)||(2546913-2547095)
chr3 (1-190)||(10726096-10726283)
chr3 (6-139)||(15539177-15539310)
chr3 (89-150)||(15045080-15045141)
chr3 (1-102)||(27052566-27052666)
chr3 (146-190)||(15540262-15540306)
chr3 (8-144)||(10934612-10934747)
chr3 (6-58)||(8853207-8853258)
[»] chr2 (3 HSPs)
chr2 (1-186)||(21654334-21654517)
chr2 (266-324)||(27353916-27353974)
chr2 (124-180)||(27353779-27353835)
[»] chr1 (2 HSPs)
chr1 (1-190)||(22615296-22615484)
chr1 (1-179)||(20407982-20408159)
[»] scaffold0530 (1 HSPs)
scaffold0530 (53-190)||(3146-3283)
[»] scaffold0007 (1 HSPs)
scaffold0007 (46-190)||(204612-204756)
[»] chr4 (4 HSPs)
chr4 (1-190)||(17959992-17960179)
chr4 (1-143)||(15711544-15711684)
chr4 (54-150)||(15692359-15692455)
chr4 (70-151)||(21982148-21982229)
[»] chr7 (2 HSPs)
chr7 (6-190)||(11773835-11774017)
chr7 (52-189)||(3170081-3170219)
[»] chr5 (3 HSPs)
chr5 (89-176)||(10176545-10176632)
chr5 (52-150)||(19859296-19859394)
chr5 (1-187)||(24194324-24194508)
[»] chr8 (2 HSPs)
chr8 (266-324)||(16091006-16091064)
chr8 (146-187)||(16091105-16091146)
[»] scaffold0184 (1 HSPs)
scaffold0184 (8-109)||(10677-10777)
[»] scaffold0185 (1 HSPs)
scaffold0185 (55-190)||(1034-1169)
[»] scaffold0190 (1 HSPs)
scaffold0190 (17-190)||(1852-2025)
[»] chr6 (1 HSPs)
chr6 (54-190)||(19977110-19977246)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 16218899 - 16218711
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||| ||||||| ||||||||||||| || ||||||||||| |  ||||| || ||||||  |||| ||||||||| || ||||||   |||||||||||    
T  16218899 tacccacaaattcacttgaattaggagcatgaatttcatcaatc-aaaaatcataaaagtctcaattaacacaaaagcacttaaactcgtaattgaaaat 16218801  T
Q  101 aagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    ||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| | ||||||||| |||||||    
T  16218800 aagagattatagcttaattatgaaaaggaaaccatcccccttacctctagtcttcaagaatcctaactttcggttcactttatctcctag 16218711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 2547095 - 2546913
Alignment:
Q  6 acaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagag 105  Q
    ||||||| ||||||||||||| ||| |||||||||| || ||||| ||||||||| ||||| |||| |||| || ||||||| |||||||||||||| ||    
T  2547095 acaaattcacttgaattaggagcacaaatttcatca-ttcaaaaatcacaaaagtcacaataaacataaaagcacttaaacccataattgaaaataatag 2546997  T
Q  106 attaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    |||| | ||||  |||| ||||||||||| | ||||||| | |||||||| |||||  ||| |||||||||| ||||||| ||||    
T  2546996 attataacttagctatg-aaaggaaaccatctcccttacctttagtcttcaagaatcataattttggcttcagtttagctactag 2546913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 10726096 - 10726283
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacac-aaaagttacaatcaacacaaaatcagttaaacctataattgaaaa 99  Q
    |||| |||||||||| |||||||||| ||||||||||||||  |  |||| ||| |||||| ||||| | || |||| || ||||| | |||||||||||    
T  10726096 tacctacaaattaacatgaattaggagcacgaatttcatca--tccaaaatcaccaaaagtcacaattatcataaaaacacttaaaaccataattgaaaa 10726193  T
Q  100 taagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    ||| ||||||   |||||| |||||||| || ||| ||||||||| |||||||||| ||||| | |||  | |||||||||||||||||||    
T  10726194 taaaagattatgacttaatcatgaaaagcaa-ccaacccccttacctctagtcttcaagaatccaaaccctagcttcactttagctcctag 10726283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 15539177 - 15539310
Alignment:
Q  6 acaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaa-cctataattgaaaataaga 104  Q
    ||||||| || |||||||||| ||| |||||||| | || ||||| ||||||||| ||| | |||| |||| || ||||| || |||||| ||||||  |    
T  15539177 acaaattcacatgaattaggagcacaaatttcatta-ttcaaaaatcacaaaagtcacagttaacaaaaaagcacttaaaacccataattaaaaatagaa 15539275  T
Q  105 gattaaagcttaattatgaaaaggaaaccaccccc 139  Q
    ||||| || ||||||||||||||||||||| ||||    
T  15539276 gattataggttaattatgaaaaggaaaccatcccc 15539310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 15045141 - 15045080
Alignment:
Q  89 ataattgaaaataagagattaaagcttaattatgaaaaggaaaccaccccccttacttctag 150  Q
    |||||||||||||  |||||| ||||||| | |||||||||||||| ||||||||| |||||    
T  15045141 ataattgaaaatagtagattatagcttaaatgtgaaaaggaaaccatcccccttacctctag 15045080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 27052566 - 27052666
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||| ||||||| || |||||||||| |||||||||||||| |  |||  ||| |||||| ||||| | |||||||||| ||||||  ||||||||||||    
T  27052566 tacccacaaattcacatgaattaggagcacgaatttcatcattcaaaaccaca-aaaagtcacaattatcacaaaatcacttaaactcataattgaaaat 27052664  T
Q  101 aa 102  Q
    ||    
T  27052665 aa 27052666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 15540262 - 15540306
Alignment:
Q  146 tctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||    
T  15540262 tctagtcttcaagaatcctaactttggcttcactttacctcctag 15540306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 10934612 - 10934747
Alignment:
Q  8 aaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagtt-acaatcaacacaaaatcagttaaacctataattgaaaataagaga 106  Q
    ||||| || |||||||||| |||||||||||||| |   |||| |||||||| | ||||| |||||| || || ||||||  |||||||||||||| |||    
T  10934612 aaattcacatgaattaggagcacgaatttcatcattc--aaaaccacaaaaggtcacaattaacacataagcatttaaactcataattgaaaataataga 10934709  T
Q  107 ttaaagcttaatta-tgaaaaggaaaccaccccccttac 144  Q
    |||   |||||||| |||||| ||||||| |||||||||    
T  10934710 ttatgacttaattagtgaaaa-gaaaccatcccccttac 10934747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 8853258 - 8853207
Alignment:
Q  6 acaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaa 58  Q
    ||||||| |||||||||||||||| ||||||||||| || ||||| |||||||    
T  8853258 acaaattcacttgaattaggaccatgaatttcatca-ttcaaaaatcacaaaa 8853207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 21654334 - 21654517
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||| ||||||| ||||||||||||| ||| |||||||||| || ||||| ||||| ||| ||||| |||||||||  ||||||||| ||||||||||||    
T  21654334 tacccacaaattcacttgaattaggagcacaaatttcatca-ttcaaaaatcacaatagtcacaattaacacaaaagtagttaaacccataattgaaaat 21654432  T
Q  101 aagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctc 186  Q
    ||||||||| |||||||||||||||||| || || ||| ||||| |||||||||| ||||| |||||||  |||||||||||||||    
T  21654433 aagagattatagcttaattatgaaaagg-aatcatccctcttacctctagtcttcaagaatcctaacttctgcttcactttagctc 21654517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 27353916 - 27353974
Alignment:
Q  266 aaaatattttgtgaagtgaatgaaatgagtagaaaacctaattttctccttagtattat 324  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||  |||||| ||||    
T  27353916 aaaatatattgtgaagtgaatgaaatgagtagaaaacctagttttcctcttagtgttat 27353974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 27353779 - 27353835
Alignment:
Q  124 aaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactt 180  Q
    ||||||||||| ||||||||| |||||||||| ||||| ||||||||  ||||||||    
T  27353779 aaaggaaaccatcccccttacctctagtcttcaagaatcctaactttaacttcactt 27353835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 22615296 - 22615484
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||||||||  | |||||||||  || ||| |||||||||| || ||||| ||||||||| | ||| ||||||||| || ||||||  |||||| |||||    
T  22615296 taccaacaatatcacttgaattgagagcacaaatttcatca-ttcaaaaatcacaaaagtcagaattaacacaaaaacacttaaactcataatttaaaat 22615394  T
Q  101 aagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||    
T  22615395 aagagattatagcttaactatgaaaaggaaaccatcccccttacctctagtcttcaagaatcctaactttgacttcactttagctcctag 22615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 20407982 - 20408159
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||| ||||||| ||||||||||||  ||||||||| |||| || ||||   |||||||| ||||| ||||||||| || |||||   ||||||||||||    
T  20407982 tacccacaaattcacttgaattaggggcacgaattttatca-ttcaaaactaacaaaagtcacaattaacacaaaagcacttaaaatcataattgaaaat 20408080  T
Q  101 aagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcact 179  Q
    |||||||||   |||||||   |||| ||||||| ||||||||| |||||||||  ||||| |||||||||||||||||    
T  20408081 aagagattatgacttaattgataaaaagaaaccatcccccttacctctagtcttaaagaatcctaactttggcttcact 20408159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 3146 - 3283
Alignment:
Q  53 acaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtc 152  Q
    |||||||| ||||| |||| |||| || ||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||| |||| |||||||    
T  3146 acaaaagtcacaattaacataaaagcacttaaacccataattgaaaataagatattatagcttaattatgaaaaggaaaccaaccccgttacctctagtc 3245  T
Q  153 ttccagaattctaactttggcttcactttagctcctag 190  Q
    |||  ||||||||||||||||||||| |||||||||||    
T  3246 ttcatgaattctaactttggcttcaccttagctcctag 3283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 204756 - 204612
Alignment:
Q  46 aaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagcttaattatgaaaaggaaaccaccccccttact 145  Q
    ||||| |||||| || | ||| ||||||||| || ||||||  || ||||||||| |||||| | |||||||||||||||| ||||||| |||||||||     
T  204756 aaaaatcacaaatgtcagaattaacacaaaaacacttaaactcatgattgaaaatgagagatcatagcttaattatgaaaacgaaaccatcccccttacc 204657  T
Q  146 tctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||    
T  204656 tctagtcttcaagaatcctaactttggcttcactttagctcctag 204612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 17959992 - 17960179
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||||| ||||| |||||| ||| || ||| || |||||||  ||||||| |||||||||  |||| | ||| ||| || ||||||| ||||||||||||    
T  17959992 taccaataaattcacttgagttaagagcacaaaattcatca--tgaaaaatcacaaaagtcccaattagcaccaaagcacttaaacccataattgaaaat 17960089  T
Q  101 aagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||| |  || ||| || |||||||| ||||||||||||    
T  17960090 aagagattatagcttaactatgaaaaagaaaccaccccccttacctctagtcttcaaagatcctagctatggcttcaatttagctcctag 17960179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 15711544 - 15711684
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||| ||||||| || |||||||||| |||||||||||||| | ||||   | ||||||| ||||| | ||||||| || |||||   ||||||||||||    
T  15711544 tacccacaaatttacatgaattaggagcacgaatttcatcattcgaaac--ctcaaaagtcacaattatcacaaaaacacttaaattcataattgaaaat 15711641  T
Q  101 aagagattaaagcttaatta-tgaaaaggaaaccacccccctta 143  Q
    | ||||||| | |||||||| |||||| ||||||| ||||||||    
T  15711642 aggagattataccttaattagtgaaaa-gaaaccatccccctta 15711684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 15692359 - 15692455
Alignment:
Q  54 caaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagcttaatt-atgaaaaggaaaccaccccccttacttctag 150  Q
    ||||||| ||||| |||||||||||| |||||| ||||||||||||||  ||||||   ||||||| ||| |||||||||||  |||||||| |||||    
T  15692359 caaaagtcacaattaacacaaaatcacttaaacttataattgaaaatagaagattatgacttaattgatg-aaaggaaaccattccccttacctctag 15692455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 21982148 - 21982229
Alignment:
Q  70 cacaaaatcagttaaacctataattgaaaataagagattaaagcttaatta-tgaaaaggaaaccaccccccttacttctagt 151  Q
    ||||||| || ||||||| |||| ||||| |||||||||| |||||||||| ||||||| | || ||||||||||| ||||||    
T  21982148 cacaaaagcacttaaacccataagtgaaattaagagattatagcttaattagtgaaaag-agactaccccccttacatctagt 21982229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 11774017 - 11773835
Alignment:
Q  6 acaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagag 105  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||| ||||||||| ||||| |||||||||||| |||| || |||||||||||||  ||    
T  11774017 acaaattcacttgaattaggagcacgaatttcatca-ttcaaaaatcacaaaagtcacaattaacacaaaatcacttaatcccataattgaaaatagaag 11773919  T
Q  106 attaaagcttaatt-atgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctcctag 190  Q
    ||||   ||||||| ||| |||||||| || ||| ||||| |||||||||| ||||| || || ||| ||||| ||||||||||||    
T  11773918 attatgacttaattgatg-aaaggaaa-catccctcttacctctagtcttcaagaatccttaccttgacttcattttagctcctag 11773835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 3170219 - 3170081
Alignment:
Q  52 cacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagcttaattatg-aaaaggaaaccaccccccttacttctag 150  Q
    ||||||| | ||||| |||| ||||  | ||||||| ||||||||||||||||||||| |||||| ||||| |||| |||| || ||||||||  || ||    
T  3170219 cacaaaaatcacaattaacataaaagaacttaaacccataattgaaaataagagattatagcttagttatgaaaaatgaaaacatcccccttatctccag 3170120  T
Q  151 tcttccagaattctaactttggcttcactttagctccta 189  Q
    || || ||||||| |||  | ||||||||||| ||||||    
T  3170119 tcgtcaagaattcaaacccttgcttcactttacctccta 3170081  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 10176632 - 10176545
Alignment:
Q  89 ataattgaaaataagagattaaagcttaattatgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttc 176  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||  ||||| ||||||||||||||    
T  10176632 ataattgaaaataggagattatagcttaattatgaaaaggaaaccacccccctaacctctagtcttgaagaatcctaactttggcttc 10176545  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 19859394 - 19859296
Alignment:
Q  52 cacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagcttaattatgaaaaggaaaccaccccccttacttctag 150  Q
    ||||||||| | ||| |||| |||| || ||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  19859394 cacaaaagtcataattaacataaaaacacttaaatccataattgaaaataagagattatagcttaattataaaaaggaaaccaccccccttacctctag 19859296  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 24194324 - 24194508
Alignment:
Q  1 taccaacaaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaat 100  Q
    |||| ||||||| ||||||||||||| |||||||||||||| || ||||| | ||||| | ||||| |||| |||| || ||||||  ||||||||||||    
T  24194324 tacccacaaattcacttgaattaggagcacgaatttcatca-ttcaaaaatctcaaaaatcacaattaacataaaagcacttaaactcataattgaaaat 24194422  T
Q  101 aagagattaaagcttaatt-atgaaaaggaaaccaccccccttacttctagtcttccagaattctaactttggcttcactttagctcc 187  Q
    |  ||||||   ||||||| ||||||| ||||||| || |||||| ||||| |||  | |||  ||||| ||||||||||||||||||    
T  24194423 ataagattatgacttaattgatgaaaa-gaaaccatcctccttacctctag-cttggaaaatcttaactatggcttcactttagctcc 24194508  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 16091064 - 16091006
Alignment:
Q  266 aaaatattttgtgaagtgaatgaaatgagtagaaaacctaattttctccttagtattat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16091064 aaaatattttgtgaagtgaatgaaatgagtagaaaacctaattttctccttagtgttat 16091006  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 16091146 - 16091105
Alignment:
Q  146 tctagtcttccagaattctaactttggcttcactttagctcc 187  Q
    ||||||||  |||||| |||||||||||||||||||||||||    
T  16091146 tctagtctgtcagaatcctaactttggcttcactttagctcc 16091105  T

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Target: scaffold0184 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 10677 - 10777
Alignment:
Q  8 aaattaacttgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagat 107  Q
    ||||| ||||||||||||| |||||||||||||| || ||||| ||||||||| ||||| |||| |||| || ||||||  ||||||| |||||||||||    
T  10677 aaattcacttgaattaggagcacgaatttcatca-ttcaaaaatcacaaaagtcacaattaacataaaaacatttaaactcataattgtaaataagagat 10775  T
Q  108 ta 109  Q
    ||    
T  10776 ta 10777  T

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Target: scaffold0185 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 1169 - 1034
Alignment:
Q  55 aaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagctt-aattatgaaaaggaaaccaccccccttacttctagtct 153  Q
    |||||| ||||| |||||||||||| ||||||| | |||||||||||||| |||| ||||| | ||||||||||||||||| | || |||| ||||| ||    
T  1169 aaaagtcacaattaacacaaaatcacttaaacccacaattgaaaataagacattatagcttcatttatgaaaaggaaaccatctccgttacctctag-ct 1071  T
Q  154 tccagaattctaactttggcttcactttagctcctag 190  Q
    ||   ||| ||  ||||| ||||||||||||||||||    
T  1070 tcacaaatcctgtctttgacttcactttagctcctag 1034  T

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Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 1852 - 2025
Alignment:
Q  17 tgaattaggaccacgaatttcatcacttgaaaaaacacaaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagctta 116  Q
    |||||||||| || ||||||||||| |  |||  ||| |||||| ||||| | ||||||| || ||||||   ||||||||||||| ||||||   ||||    
T  1852 tgaattaggagcatgaatttcatcattcaaaaccaca-aaaagtcacaattaccacaaaagcacttaaactcgtaattgaaaataatagattatgactta 1950  T
Q  117 atta-tgaaaaggaaaccaccccccttacttctag-tcttccagaattctaactttggcttcactttagctcctag 190  Q
    |||| |||||| ||||||| ||||||||| ||||| ||||| ||||| |||||  | | |||||||||||||||||    
T  1951 attagtgaaaa-gaaaccatcccccttacctctagttcttcaagaatcctaaccctagtttcactttagctcctag 2025  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 19977246 - 19977110
Alignment:
Q  54 caaaagttacaatcaacacaaaatcagttaaacctataattgaaaataagagattaaagcttaatt-atgaaaaggaaaccaccccccttacttctagtc 152  Q
    ||||||| ||||| |||| |||| || ||||||| |||||||||| ||  ||||||   ||||||| |||||| |||||||| | ||||||| | |||||    
T  19977246 caaaagtcacaattaacataaaagcacttaaacccataattgaaattagaagattattacttaattgatgaaa-ggaaaccatctcccttacctatagtc 19977148  T
Q  153 ttccagaattctaactttggcttcactttagctcctag 190  Q
    ||   |||| ||||||||| |||||||||| |||||||    
T  19977147 tttatgaatcctaactttgtcttcactttatctcctag 19977110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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