View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17547_low_1 (Length: 473)
Name: NF17547_low_1
Description: NF17547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17547_low_1 |
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| [»] scaffold1683 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 41528485 - 41528938
Alignment:
| Q |
11 |
aagaaaagatttggattaggattagaaagttactatggatcatatatgacttcatggcacattgaagcgtttacaaaggattagggaagctgtagatgac |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41528485 |
aagaaaagatttggattaggattagaaagtaactatggatcatttacgacttaatggcacattgaagcgtttaaaaaggattagggaagctgtagatgac |
41528584 |
T |
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| Q |
111 |
tcatagttattttctaccctgattcgagataaatttcaatct------aaatccaacacaaaaagaagatttt-ttacttgaaattcctcgtgggataag |
203 |
Q |
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| T |
41528585 |
tcatatttactttctaccccgattcgagttaaatctcaatctcaatctaaatccaacacaaaaagaagatttttttacttgaaattcctcgtgggataag |
41528684 |
T |
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| Q |
204 |
ttttactagccactatgtcttttaacttattttttgtttcaaattggttccatctaccgtagattaaagtaaaattatttctattacaacaatctataag |
303 |
Q |
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||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41528685 |
ttttactggccattatgtctcttaacttattttatgtttcaaattggttccatctaccgtagattaaagtaaaattatttctattacaacaatttataag |
41528784 |
T |
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| Q |
304 |
tggtatgtcttctacatccaacttccctctaatttacaaaaagattaataactcatataatcccttttttatttcacattgttctcctctcaataccatg |
403 |
Q |
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| T |
41528785 |
tggtatgtcttgtacatccaacttccctctaatttacaaaaagattaataattcatataatcccttttttatttcacaatgttctcctctcaataccgta |
41528884 |
T |
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| Q |
404 |
caataattcttaataagatatccacaattttctacattgaatagatcaaagttc |
457 |
Q |
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| T |
41528885 |
caataattcttaataagatatccacaattttttacattgaatagatcaaagttc |
41528938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 1146 - 1474
Alignment:
| Q |
11 |
aagaaaagatttggattaggattagaaagttactatggatcatatatgacttcatggcacattgaagcgtttacaaaggattagggaagctgtagatgac |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
1146 |
aagaaaagatttggattaggattagaaagtaactatggatcatttacgacttcatggcatattgaagcgtttataaaggattagggaagctgtagatgac |
1245 |
T |
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| Q |
111 |
tcatagttattttctaccctgattcgagataaatttcaa------tctaaatccaacacaaaaagaagattttttacttgaaattcctcgtgggataagt |
204 |
Q |
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| T |
1246 |
ccatagttactttctaccctgattcgagctaaatctcaatctcaatctaaatcgaatacaaaaagaatattttttacttgaaatttctcgtgggataagt |
1345 |
T |
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| Q |
205 |
tttactagcca----ctatgtcttttaacttattttttgtttcaaattggttccatctaccgtagattaaagtaaaattatttctattacaacaatctat |
300 |
Q |
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| T |
1346 |
tttacttgccattatatatgtcttttaacttatcttttgtttcaaattggttccatctaccgtagattaaagtaaaattatttctattacaacaatttat |
1445 |
T |
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| Q |
301 |
aagtggtatgtcttctacatccaacttcc |
329 |
Q |
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| T |
1446 |
aactggtatctattgtacatccaacttcc |
1474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 337 - 431
Target Start/End: Original strand, 1 - 95
Alignment:
| Q |
337 |
ttacaaaaagattaataactcatataatcccttttttatttcacattgttctcctctcaataccatgcaataattcttaataagatatccacaat |
431 |
Q |
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| T |
1 |
ttacaaaaagattaataattcatataatcccttttttatttcacaatgttctcctctcaataccgtacaataattcttaataagatatccacaat |
95 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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