View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17547_low_4 (Length: 251)
Name: NF17547_low_4
Description: NF17547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17547_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 51996200 - 51995969
Alignment:
| Q |
10 |
atcaatttcatgtagccatgaagaaatatatatgtttagttgagtctttgtacgaagaaatcagttgttttgttggggaagattttgaatgttaagtact |
109 |
Q |
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| T |
51996200 |
atcaatttcatgtagtcatgaagaaatatatatgtttcgttgagtctttgtacgaagaaatcagttgttttgttggggaagattttgaatgtcaagtact |
51996101 |
T |
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| Q |
110 |
ttggcaggcaacaaatgcttttctcaaaggtcactcaaactcagagcttcagatcattgggttgaagttgtgtcctttattgcaacatatcaaagagcct |
209 |
Q |
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| T |
51996100 |
ttggcaggtaacaaatgcttttctcaaaggtcactcaaactcagagcttcagatcattgggttgaagttgtgtcctttattgcagcatatcaaagagcct |
51996001 |
T |
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| Q |
210 |
aatcctcatcaaagtgttttgcgatattcatc |
241 |
Q |
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| T |
51996000 |
aatcctcatcaaagtgttttgcgatattcatc |
51995969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 52008692 - 52008527
Alignment:
| Q |
49 |
ttgagtctttgtacgaagaaatcagttgttttgttggggaagattttgaatgttaagtactttggcaggcaacaaatgcttttctcaaaggtcactcaaa |
148 |
Q |
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| T |
52008692 |
ttgagtttttgtacaaagaaattagttgatttgttggagaagattttgaatgttac-tactattgcaggtaacagatgtttttctcaacgggcactcaaa |
52008594 |
T |
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| Q |
149 |
ctcagagcttcagatcattgggttgaagttgtgtcctttattgcaacatatcaaagagcctaatcct |
215 |
Q |
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| T |
52008593 |
cttagagattcagatcattgggttgaagttgtgtcctttattgcagcatatcaaagagcctaatcct |
52008527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 51990571 - 51990722
Alignment:
| Q |
85 |
gggaagattttgaatgttaagtactttggcaggcaacaaatgcttttctcaaaggtcactcaaactcagagcttcagatcattgggttgaagttgtgtcc |
184 |
Q |
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||||||||||||||||| || |||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
51990571 |
gggaagattttgaatgtgaaatactttggcaggtgacaaatgtttttctcaaagggcactcaaactctgagcttcagatcatt-cgttgaagttatgtcc |
51990669 |
T |
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| Q |
185 |
tttattgcaacatatcaaagagcctaatcctcatcaaagtgttttgcgatatt |
237 |
Q |
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| T |
51990670 |
tttattttagcatatcaaagggcctaatcctcatcaaggtgttttgcgatatt |
51990722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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