View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_high_5 (Length: 321)
Name: NF17548_high_5
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 39776256 - 39776569
Alignment:
| Q |
1 |
atggatgacttgatcattgatattattggttaaaacgagttaagccggaccaattcttgagtttgacttgtgaaaaaattagatgaattgaatctgactc |
100 |
Q |
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| T |
39776256 |
atggatgacttgatcattgatattattggttcaaacgagttaagccggaccaattcttgagtttgacttgtgaaaaaattagatgaattgaatctgactc |
39776355 |
T |
|
| Q |
101 |
atttatttaaataattctaactaaaaatttggactgacttgttattgaatgataaaagctttagctttaattattttgggtccataaaccattttctttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39776356 |
atttatttaaataattctaactaaaaatttggactgacttgttattgaatgataaaagctttagctttaattattttgggtccataaaccattttctttg |
39776455 |
T |
|
| Q |
201 |
ttggcagtttccacatttttaggaatttggatgaatctgtatgtctattattactgcatttcagtctagcacaatttccttccattgttttcttgttaat |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39776456 |
ttggcaggttccacatttttaggaatttggatgaatctgtatgtctattattactgcatttcagtctagcacaatttccttccattgttttcttgttaat |
39776555 |
T |
|
| Q |
301 |
aatttcctttgctt |
314 |
Q |
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|||||||||||||| |
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| T |
39776556 |
aatttcctttgctt |
39776569 |
T |
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