View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_1 (Length: 482)
Name: NF17548_low_1
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 244 - 482
Target Start/End: Complemental strand, 6796922 - 6796684
Alignment:
| Q |
244 |
agaatattttctataatggataatcaacattataagaatattttttatgcactatcagctaaaaaacatactacaatatcaattaatgacaaatcatcta |
343 |
Q |
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| T |
6796922 |
agaatattttctataatggataatcaacattataagaatattttttatgcactatcagctaaaaaacatactacaatatcaattaatgacaaatcatcta |
6796823 |
T |
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| Q |
344 |
tttgtatgactcttaaagtagatataattaaaatcaaatatttttgaacgtctaattgccgtgattaattgcattgtaaacaattgtacattgtcaatac |
443 |
Q |
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| T |
6796822 |
tttgtatgactcttaaagtagatataattaaaatcaaatatttttgaacgtctaattgtcgtgattaattgcattgtaaacaatcgtacattgtcaatac |
6796723 |
T |
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| Q |
444 |
atatcaatcaaaattcatttattaatatcattttttctc |
482 |
Q |
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| T |
6796722 |
atatcaatcaaaatccatttattaatatcattttttctc |
6796684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 6797154 - 6796986
Alignment:
| Q |
12 |
gtgagaagaaggatggccacataaactttgcaaattgacaaagttgatatgattgagcttgacaagaaccaagaaagcgtttagaattatgaattactgt |
111 |
Q |
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| T |
6797154 |
gtgagaagaaggatgaacccataaactttacaaattgacaaagttgatatgcttgagcttgacaagaaccaagaaagcgtttagaattatgaattactgt |
6797055 |
T |
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| Q |
112 |
gtggattatgaatttatgatgcatgacctgaactaagattactagacaaagcaacaataaaagtaatag |
180 |
Q |
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| T |
6797054 |
gtggattatgaatttatgatgcatgacctgaactaagattactagacaaagcaacattaaaagtaatag |
6796986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 32428252 - 32428294
Alignment:
| Q |
344 |
tttgtatgactcttaaagtagatataattaaaatcaaatattt |
386 |
Q |
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| T |
32428252 |
tttgtatgactcttaaattagatataattaaaattaaatattt |
32428294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 6240308 - 6240352
Alignment:
| Q |
344 |
tttgtatgactcttaaagtagatataattaaaatcaaatattttt |
388 |
Q |
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| T |
6240308 |
tttgtatgactattaaagtatatacgattaaaatcaaatattttt |
6240352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 7967418 - 7967386
Alignment:
| Q |
356 |
ttaaagtagatataattaaaatcaaatattttt |
388 |
Q |
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| T |
7967418 |
ttaaaatagatataattaaaatcaaatattttt |
7967386 |
T |
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