View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17548_low_10 (Length: 265)

Name: NF17548_low_10
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17548_low_10
NF17548_low_10
[»] chr2 (8 HSPs)
chr2 (18-167)||(6796419-6796568)
chr2 (92-167)||(13326996-13327071)
chr2 (85-167)||(7181553-7181635)
chr2 (94-167)||(39990578-39990651)
chr2 (95-167)||(6801054-6801126)
chr2 (96-167)||(35926125-35926196)
chr2 (96-167)||(35920134-35920205)
chr2 (232-265)||(6796633-6796666)
[»] chr6 (6 HSPs)
chr6 (95-167)||(992442-992514)
chr6 (96-167)||(10754597-10754668)
chr6 (96-167)||(10750280-10750351)
chr6 (96-150)||(32678635-32678689)
chr6 (95-167)||(18613087-18613159)
chr6 (96-167)||(10748684-10748755)
[»] chr4 (3 HSPs)
chr4 (96-167)||(49152535-49152606)
chr4 (95-167)||(38393563-38393635)
chr4 (101-157)||(26929299-26929355)
[»] chr3 (7 HSPs)
chr3 (96-167)||(34974803-34974874)
chr3 (96-167)||(47565677-47565748)
chr3 (96-167)||(53682982-53683053)
chr3 (95-167)||(53107638-53107710)
chr3 (96-167)||(31125753-31125824)
chr3 (96-167)||(38930471-38930542)
chr3 (105-142)||(32170503-32170540)
[»] chr1 (21 HSPs)
chr1 (96-167)||(5126504-5126575)
chr1 (96-167)||(48033103-48033174)
chr1 (96-167)||(48034711-48034782)
chr1 (96-167)||(48035758-48035829)
chr1 (96-167)||(48041324-48041395)
chr1 (96-167)||(48050609-48050680)
chr1 (96-167)||(48055943-48056014)
chr1 (96-167)||(29812825-29812896)
chr1 (96-167)||(48040173-48040244)
chr1 (96-167)||(48042835-48042906)
chr1 (96-167)||(48049407-48049478)
chr1 (95-167)||(48036720-48036792)
chr1 (95-167)||(48042224-48042296)
chr1 (96-167)||(39972786-39972857)
chr1 (96-167)||(48053127-48053198)
chr1 (99-167)||(48050016-48050084)
chr1 (96-167)||(22908324-22908395)
chr1 (96-167)||(48054679-48054750)
chr1 (96-154)||(29813662-29813720)
chr1 (96-167)||(48048642-48048714)
chr1 (106-165)||(48054322-48054381)
[»] chr7 (4 HSPs)
chr7 (93-167)||(23780466-23780540)
chr7 (90-167)||(43920601-43920678)
chr7 (95-167)||(40706105-40706177)
chr7 (101-157)||(46064798-46064854)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 6796419 - 6796568
Alignment:
Q  18 ataagatatttgtttctgtagtttttgttgctctttcgctacgattaggaatataacatgtactttcatatcacaattgggcatttggtctagtggtatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  6796419 ataagatatttgtttctgtagtttttgttgctctttcgctacgattaggaatataacatgtactttcatatcacaaaagggcatttggtctagtggtatg 6796518  T
Q  118 attctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796519 attctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 6796568  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 13327071 - 13326996
Alignment:
Q  92 aattgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13327071 aattgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 13326996  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 7181553 - 7181635
Alignment:
Q  85 atatcacaattgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7181553 atatcacaaaagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 7181635  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 39990578 - 39990651
Alignment:
Q  94 ttgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  39990578 ttgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 39990651  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 6801126 - 6801054
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  6801126 tgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 6801054  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 35926196 - 35926125
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  35926196 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 35926125  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 35920205 - 35920134
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||| |||||||||||||||||||| |||| |||||||||||||||  ||||| |||||| |||||||||    
T  35920205 gggcatctggtctagtggtatgattcttgcttagggtgcgagaggtcccaagttcaattctcggaatgcccc 35920134  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 6796633 - 6796666
Alignment:
Q  232 gggtaagaaaccatacttttataaatctaaccct 265  Q
    ||||||||||||||||||||||||||||||||||    
T  6796633 gggtaagaaaccatacttttataaatctaaccct 6796666  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 992514 - 992442
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  992514 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 992442  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 10754668 - 10754597
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  10754668 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 10754597  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 10750351 - 10750280
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||| |||||||||||||||||||||| |||||| |||||||| |||||| |||||| |||||||||    
T  10750351 gggcatttgatctagtggtatgattctcgcttagggtgcaagaggtcccgagttcaattctcggaatgcccc 10750280  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 32678689 - 32678635
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttc 150  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  32678689 gggcatttggtctagtggtatgattctcgctttgggtgtgagaggtcctgagttc 32678635  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 18613087 - 18613159
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||  |||||| |||||||||    
T  18613087 tgggcatttgatctagtggtatgattcttgcttagggtgcgagaggtcccgagtttaattctcggaatgcccc 18613159  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 10748755 - 10748684
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||| ||||||||||| || ||||| ||||||||  ||| || |||||| |||||||||    
T  10748755 gggcatttggtctagtgatatgattctcgtttagggtgtgagaggtctcgagctcaattctcggaatgcccc 10748684  T

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Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 49152606 - 49152535
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152606 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 49152535  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 38393635 - 38393563
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  38393635 tgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 38393563  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 26929355 - 26929299
Alignment:
Q  101 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 157  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  26929355 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 26929299  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 34974803 - 34974874
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974803 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 34974874  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 47565748 - 47565677
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47565748 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 47565677  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 53682982 - 53683053
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53682982 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 53683053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 53107638 - 53107710
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  53107638 tgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 53107710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 31125753 - 31125824
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  31125753 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 31125824  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 38930542 - 38930471
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  38930542 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 38930471  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 32170503 - 32170540
Alignment:
Q  105 gtctagtggtatgattctcgctttgggtgcgagaggtc 142  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  32170503 gtctagtggtatgattctagcttggggtgcgagaggtc 32170540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 5126504 - 5126575
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126504 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 5126575  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48033103 - 48033174
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033103 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48033174  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48034711 - 48034782
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034711 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48034782  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48035758 - 48035829
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48035758 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48035829  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48041324 - 48041395
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041324 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48041395  T

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Target: chr1; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48050609 - 48050680
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48050609 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48050680  T

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Target: chr1; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48055943 - 48056014
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48055943 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48056014  T

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Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 29812896 - 29812825
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  29812896 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 29812825  T

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Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48040173 - 48040244
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48040173 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 48040244  T

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Target: chr1; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48042835 - 48042906
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  48042835 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggcccggagttcgattctctgaatgcccc 48042906  T

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Target: chr1; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48049407 - 48049478
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48049407 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 48049478  T

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Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 48036720 - 48036792
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  48036720 tgggtatttggtctagtggtatgattctcgctttgggtgccagaggtccggagtttgattctccgaatgcccc 48036792  T

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Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 48042224 - 48042296
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||    
T  48042224 tgggcatttggtctagtggtatgattctcgcttcgggtgcgagaggttccgagttcgattctcggaatgcccc 48042296  T

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Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 39972857 - 39972786
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  39972857 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 39972786  T

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Target: chr1; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48053127 - 48053198
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  48053127 gggcatttggtctagtggtataattctcgctttgggtgcgagaggtcccgagttcaattctcggaatgcccc 48053198  T

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Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 48050016 - 48050084
Alignment:
Q  99 catttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||    
T  48050016 catttggtctagtggtatgattctcgctttgggtgtgagaggttccgagttcgattctcggaatgcccc 48050084  T

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Target: chr1; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 22908324 - 22908395
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||| |||||||||    
T  22908324 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtctcgagttcaattctcggaatgcccc 22908395  T

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Target: chr1; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48054679 - 48054750
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||| |||||||||    
T  48054679 gggcatttggtctagaggtatgattctcgctttgggtgcgagaggttccgagttcaattctcggaatgcccc 48054750  T

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Target: chr1; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 29813720 - 29813662
Alignment:
Q  96 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgatt 154  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  29813720 gggcatttggtctagtggtttgattctcgctttgggtgcgagaggtcctgagttcgatt 29813662  T

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Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 48048642 - 48048714
Alignment:
Q  96 gggcatttggtc-tagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||  |||| ||||||| |||||||||    
T  48048642 gggcatttggtcctagtggtatcattctcgctttgggtgcgagaggtcccaagtttgattctcggaatgcccc 48048714  T

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Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 48054322 - 48054381
Alignment:
Q  106 tctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcc 165  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  48054322 tctagtgaaatgattctcgctttgggtgcgagaggtcctgagttcgattctcagaatgcc 48054381  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 23780466 - 23780540
Alignment:
Q  93 attgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  23780466 attgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 23780540  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 43920601 - 43920678
Alignment:
Q  90 acaattgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||    
T  43920601 acaaatgggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 43920678  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 40706105 - 40706177
Alignment:
Q  95 tgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 167  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||| |||||| |||||| |||||||||    
T  40706105 tgggcatttggtctagttgtatgattctcgcttaaggtgcgagaggtcccgagttcaattctcggaatgcccc 40706177  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 46064854 - 46064798
Alignment:
Q  101 tttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctc 157  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  46064854 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctc 46064798  T

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