View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_12 (Length: 242)
Name: NF17548_low_12
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 42974826 - 42974595
Alignment:
| Q |
1 |
acatttatgattctaactctaatcaactaactactactaaaagacactttctcatttaaaatttccattttcctccttcaaaagataaagatattattag |
100 |
Q |
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| T |
42974826 |
acatttatgattctaactctaatcaactaactactactaaaagacactttctcatttaaaatttccattttcctccttcaaaagataaagatattattag |
42974727 |
T |
|
| Q |
101 |
cattctgcaatatcatgatctaatcaaggagtgataccga------tacctttggaaaaagattataatatgagttaagctaagtactaggtagctaatt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42974726 |
cattctgcaatatcatgatctaatcaaggagtgataccgataccgatacctttggaaaaagattataatatgagttaagctaagtactaggtagctaatt |
42974627 |
T |
|
| Q |
195 |
tagcaacctaatctcaagctaagagcagcttt |
226 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42974626 |
tagcaacctaatctcaagctaagagcagcttt |
42974595 |
T |
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