View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_13 (Length: 238)
Name: NF17548_low_13
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 7494630 - 7494852
Alignment:
| Q |
16 |
caaaaacaaaattgacattatcattaatatctccaaatattacccaaaacaagtaaataattgatactaatattaaaactatagattagaattacaaaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
7494630 |
caaaaacaaaattgacattatcattaatatctccaaatattacccaaaacaagtaaataactcatactaatattaaaactatagattagaattacaaaac |
7494729 |
T |
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| Q |
116 |
aaaaactgaaagtgaagattaaagtgggtcagaaaatggtgaattccaaatgtgtcgccggcgagattccggggagaatttttctgacaatcacagccaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7494730 |
aaaaactgaaagtgaagattaaagtgggtcagaaaatggtgaattccaaatgtgtcgccggcgagattccagggagaatttttctgacaatcacagccaa |
7494829 |
T |
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| Q |
216 |
cgaaggctcctgtggtcacctcc |
238 |
Q |
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| T |
7494830 |
cgaaggctcctgtggtcacctcc |
7494852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 38618886 - 38618663
Alignment:
| Q |
16 |
caaaaacaaaattgacattatcattaatatctccaaatattacccaaaa-caagtaaataattgatactaatattaaaactatagattagaattacaaaa |
114 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
38618886 |
caaaaataaaattgacattatcattaatatctccaaatattacccaaaaacaagtaaataactcatactaatattaaaactatagattagaattacaaaa |
38618787 |
T |
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| Q |
115 |
caaaaactgaaagtgaagattaaagtgggtcagaaaatggtgaattccaaatgtgtcgccggcgagattccggggagaatttttctgacaatcacagcca |
214 |
Q |
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| T |
38618786 |
caaaaactgaaagtgaagattaaagtgggtcagaaaatggtgaattccaaatgtgtcgccggcgagattccggggagaatttttccgacaatcacagcca |
38618687 |
T |
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| Q |
215 |
acgaaggctcctgtggtcacctcc |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
38618686 |
acgaaggctcctgtggtcacctcc |
38618663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 37373239 - 37373461
Alignment:
| Q |
16 |
caaaaacaaaattgacattatcattaatatctccaaatattacccaaaacaagtaaataattgatactaatattaaaactatagattagaattacaaaac |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
37373239 |
caaaaacaaaattgacattatcattaatatctctaaatattacccaaaacaagtaaataactcatactaatattaaaactatagattagaattacaaaac |
37373338 |
T |
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| Q |
116 |
aaaaactgaaagtgaagattaaagtgggtcagaaaatggtgaattccaaatgtgtcgccggcgagattccggggagaatttttctgacaatcacagccaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37373339 |
aaaaactgaaagtgaagattaaagtgggtcagaaaatggtgaatttcaaatgtgtcaccgacgagattccggggagaatttttctgacaatcacagccaa |
37373438 |
T |
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| Q |
216 |
cgaaggctcctgtggtcacctcc |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
37373439 |
cgaaggctcctgtggtcacctcc |
37373461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 26487218 - 26487440
Alignment:
| Q |
16 |
caaaaacaaaattgacattatcattaatatctccaaatattacccaaaacaagtaaataattgatactaatattaaaactatagattagaattacaaaac |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
26487218 |
caaaaataaaattgacattatcattaatatctccaaatattacccaaaacaagtacataactcatactaatattaaaactatagattagaattacaaaac |
26487317 |
T |
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| Q |
116 |
aaaaactgaaagtgaagattaaagtgggtcagaaaatggtgaattccaaatgtgtcgccggcgagattccggggagaatttttctgacaatcacagccaa |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
26487318 |
aaaaactgaaagcgaagattaaagtgggtcagaaaatggtgaattccaaatgtgtcgccggcgagatttcggagagaatttttctgacaatcacagccaa |
26487417 |
T |
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| Q |
216 |
cgaaggctcctgtggtcacctcc |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
26487418 |
cgaaggctcctgtggtcacctcc |
26487440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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