View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_15 (Length: 223)
Name: NF17548_low_15
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 33631906 - 33632097
Alignment:
| Q |
21 |
tgagactcttaacacttacaaaatactaattctttatcccttgatgcatgtgtg--agtgcgtaaagaagttcaaaaccttcctacctcctcatta---a |
115 |
Q |
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| T |
33631906 |
tgagattcttaacacttacaaaatactaattctttatcccttgatgcatgtgtgtgagtgcgtaaagaagttcaaaaccttcctacctcctcattattca |
33632005 |
T |
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| Q |
116 |
tgttttgtaaattgtatttaagtgctttgatttgttaattcaagtttctaaaatcacaagatatcttgtacctatctatcgcagccaatgat |
207 |
Q |
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| T |
33632006 |
tgttttgtaaattgaatttaagtgctttgatttgttaattcaagtttctaaaatcacaagatatcttgtacctatctatcgcagccaatgat |
33632097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 33631571 - 33631641
Alignment:
| Q |
29 |
ttaacacttacaaaatactaattctttatcccttgatgca--tgtgtgagtgcgtaaagaagttcaaaacc |
97 |
Q |
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| T |
33631571 |
ttaaaacttacaaaatactaattctttatcccttgatgcatgtgtgtgagtgtgtaaagaagttcaaaacc |
33631641 |
T |
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