View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_16 (Length: 202)
Name: NF17548_low_16
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 33828557 - 33828386
Alignment:
| Q |
15 |
gaatatatgttcaaatgggtaagcaattaactatttttgtgtatagttaatcatgtggcttcaaaatttataactagatatagtaaaatttaatcatgtt |
114 |
Q |
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| T |
33828557 |
gaatatatgttcaaatgggtaagcaattaactatttttgtgtatagttaatcatgtggcttcaaaatttataactagatatagtaaaatttaatcatgtt |
33828458 |
T |
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| Q |
115 |
tgcttgcaggtagttattgtgggaggagtaatctctctatttctgtttttcatgattatcatctatgcttac |
186 |
Q |
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| T |
33828457 |
tgcttgcaggtagttattgtgggaggagtaatctctctatttctgtttttcatgattatcatctatgcttac |
33828386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 33839409 - 33839580
Alignment:
| Q |
15 |
gaatatatgttcaaatgggtaagcaattaactatttttgtgtatagttaatcatgtggcttcaaaatttataactagatatagtaaaatttaatcatgtt |
114 |
Q |
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| T |
33839409 |
gaatatatgttcaaatgggtaagcaattaactatttttgtgtatagttaatcatgtggcttcaaaatttataactagatatagtaaaatttaatcatgtt |
33839508 |
T |
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| Q |
115 |
tgcttgcaggtagttattgtgggaggagtaatctctctatttctgtttttcatgattatcatctatgcttac |
186 |
Q |
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| T |
33839509 |
tgcttgcaggtagttattgtgggaggagtaatctctctatttctgtttttcatgattatcatctatgcttac |
33839580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 33806464 - 33806339
Alignment:
| Q |
56 |
tatagttaatcatgtggcttcaaaatttataactagatatagtaaaatttaatcatgtttgcttgcaggtagttattgtgggaggagtaatctct-ctat |
154 |
Q |
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| T |
33806464 |
tatagttaagcatttggctgcaaaattta--actaggtagagtaacatataatcatgtttacttgcaggtagttattttctcaggagtattttctgcta- |
33806368 |
T |
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| Q |
155 |
ttctgtttttcatgattatcatctatgct |
183 |
Q |
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| T |
33806367 |
ttatgtttctcatgattatcatctatgct |
33806339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 33865934 - 33865809
Alignment:
| Q |
56 |
tatagttaatcatgtggcttcaaaatttataactagatatagtaaaatttaatcatgtttgcttgcaggtagttattgtgggaggagtaatctct-ctat |
154 |
Q |
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| T |
33865934 |
tatagttaagcatttggctgcaaaattta--actaggtagagtaacatataatcatgtttacttgcaggtagttattttctcaggagtattttctgcta- |
33865838 |
T |
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| Q |
155 |
ttctgtttttcatgattatcatctatgct |
183 |
Q |
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| T |
33865837 |
ttatgtttctcatgattatcatctatgct |
33865809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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