View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_2 (Length: 475)
Name: NF17548_low_2
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 25306561 - 25306101
Alignment:
| Q |
1 |
atccacatcacaacaaatcacatctttttcgagtatgtcaaaaatatttaaatccaatttcacattttttgttatgaaattcaagttgatctcttaaact |
100 |
Q |
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| T |
25306561 |
atccacatcacaacaaatcacatctttttcgagtatgtcaaaaatatttaattccaatttcacattgtttgttatgaaattcaagttgatctcttaaact |
25306462 |
T |
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| Q |
101 |
ttctctccaatctttctagtgatcgagtggtggttattttcactacacccatttaggtccnnnnnnnnnatcactagatactaagcttataattattgac |
200 |
Q |
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| T |
25306461 |
ttctctccaatctttctagtgatcgagtggtggttattttcactacgcccatttaggtcctttttttt-atcactagatactaagcttataattattgac |
25306363 |
T |
|
| Q |
201 |
attcagtgtgcaattcatcttcttgattggttt-------------------aaaatcaatcttgatgacttaacgctcactgacgatgaagggttgtgt |
281 |
Q |
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| T |
25306362 |
attcagtgtgcaattcatcttcttgattggttttttattcaaaattgtgtttaaaatcaatcttgatgacttaacgcttactgacgatgaagggctgtgt |
25306263 |
T |
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| Q |
282 |
tttgaactagaggaagagagtgaggtagggaattatccgaatttgtgtttggtgagccgttttccggtgaatcaaccctttaagatgaaacccatgaagg |
381 |
Q |
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| T |
25306262 |
tttgaactagaggaagagagtgaggtagggaattatccgaatttgtgtttggtgaggcgttttccggtgaatcaaccctttaagatgaaacccatgaagg |
25306163 |
T |
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| Q |
382 |
tgtgtatgcctgaagtgtggcggctgatgaaggttgtgccggtaaaggagactttccttggt |
443 |
Q |
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| T |
25306162 |
tgtgtatgcctgaagtgtggcggatgatgaaggttgtggcagtaaaggagactttccttggt |
25306101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 25277869 - 25277805
Alignment:
| Q |
20 |
acatctttttcgagtatgtcaaaaatatttaaatccaatttcacattttttgttatgaaattcaag |
85 |
Q |
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| T |
25277869 |
acatctttttctagcatgtcaaaa-tattaaaatccattttcacattgtttcttatgaaattcaag |
25277805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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