View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_3 (Length: 459)
Name: NF17548_low_3
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Original strand, 51845720 - 51846153
Alignment:
| Q |
9 |
gagatgaataaagtaagcagagatatatttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattacc |
108 |
Q |
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| T |
51845720 |
gagatgaataaagtaagcagagatatatttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattacc |
51845819 |
T |
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| Q |
109 |
gcagggaggagaagttatttgttactgaatacatgcctaaaggaagcttgttatatgtcttgcatggtaacgctgtcacattttatttcttttcctttaa |
208 |
Q |
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| T |
51845820 |
gcagggaggagaagttatttgttactgaatacatgcctaaaggaagcttgttatatgtcttgcatggtaacgctgtcacattttatttcttttcctttaa |
51845919 |
T |
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| Q |
209 |
tgagcttgttctatctcaaatttggtgcattcatgtgttattttatagtcatttatacacattcatgtgtaatgtttgttgtacaggtgatagaggaaca |
308 |
Q |
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| T |
51845920 |
tgagcttgttctatctcaaatttggtgcattcatgtgttattttatagtcatttatacacattcatgtgtaatgtttgttgtacaggtgatagaggaaca |
51846019 |
T |
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| Q |
309 |
agtcatgctgaactaaattggccaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatactgaatttgaatccgaagacctgc |
408 |
Q |
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| T |
51846020 |
agtcatgctgaactaaattggccaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatactgaatttgaatccgaagacctgc |
51846119 |
T |
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| Q |
409 |
cacatggaaacctcaaatcaagcaatatacttct |
442 |
Q |
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| T |
51846120 |
cacatggaaacctcaaatcaagcaatatacttct |
51846153 |
T |
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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 18628379 - 18628238
Alignment:
| Q |
36 |
tttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattaccgcagggaggagaagttatttgttactg |
135 |
Q |
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|||||||| |||||||||| |||||||||| ||||| | |||||||||| ||||||||||||| ||||| || | ||||| ||| | |||||||||| |
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| T |
18628379 |
tttgatgctgagatgagacagtttgggaggattagacatgctaatattttgactcctttggcttatcattatcgtcgagaggaaaagctttttgttactg |
18628280 |
T |
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| Q |
136 |
aatacatgcctaaaggaagcttgttatatgtcttgcatggta |
177 |
Q |
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| || | |||||||||||||||||||||||||||||| |||| |
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| T |
18628279 |
agtataagcctaaaggaagcttgttatatgtcttgcacggta |
18628238 |
T |
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