View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17548_low_7 (Length: 287)
Name: NF17548_low_7
Description: NF17548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17548_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 55988968 - 55989177
Alignment:
| Q |
1 |
ttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttcaaaaat |
100 |
Q |
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| T |
55988968 |
ttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttattatgcttggaagcagctttctgagcaagcttcaaaaat |
55989067 |
T |
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| Q |
101 |
catgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtatctgttc |
200 |
Q |
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| T |
55989068 |
catgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcaggttgcaccttcttcagaacttggtagatgtatctgttc |
55989167 |
T |
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| Q |
201 |
aactttaaca |
210 |
Q |
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|||||||||| |
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| T |
55989168 |
aactttaaca |
55989177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 55324956 - 55325158
Alignment:
| Q |
1 |
ttccctaaccgcagacgagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttcaaaaat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || || |
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| T |
55324956 |
ttccctaaccgcagcggagatgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttcga---agctttctgagcaagcttc-aacat |
55325051 |
T |
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| Q |
101 |
catgtctgttaagatagtgttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtatctgttc |
200 |
Q |
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| T |
55325052 |
catgtctgttaagatagtgttcatca--at-tccacagccccggcagatatagcaatgtcagggtgaaccttcttcagaacttcgtagatgaatttgttc |
55325148 |
T |
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| Q |
201 |
aactttaaca |
210 |
Q |
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|||||||||| |
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| T |
55325149 |
aactttaaca |
55325158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 55972735 - 55972918
Alignment:
| Q |
20 |
atgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| | |||| |
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| T |
55972735 |
atgtcaggctcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagc---tttctgagcaagcttcaaca-tcatgtctgttataagagtg |
55972830 |
T |
|
| Q |
120 |
ttcatcatcatattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtatctgttcaactttaaca |
210 |
Q |
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|||||||| || | ||| ||| |||| |||||||||||||| || |||||||| ||||||| |||||||||| |||| |||||||||| |
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| T |
55972831 |
ttcatcat---atccagggcttcaccagagatagcaatgtcaggatgaaccttcttaagaacttagtagatgtatttgttaaactttaaca |
55972918 |
T |
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