View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17549_high_3 (Length: 275)
Name: NF17549_high_3
Description: NF17549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17549_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 48255127 - 48255388
Alignment:
| Q |
1 |
tattcgacccatttgtttgatcaacacctaacaagagacaatgatattgtcaatcgttagattgaagatagtagttatttgactattaatcatattcatc |
100 |
Q |
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| T |
48255127 |
tattcgacccatttgtttgatcaacacctaacaagtgacaatgatattttcaatcgttagattgaagatagtagttatttgactattaatgatattcatc |
48255226 |
T |
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| Q |
101 |
atttcatgattgtctacaaaagactgcaagtggtttagcaatagaaggattgacatgatttcctatatacacatatacataaccatcatgaatagttctt |
200 |
Q |
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| T |
48255227 |
atttcatgattgtctacaaaagactgcaagtggtttagcaatagaaggattgacatgatttcctatatacacatatacataaccatcatgactagttctt |
48255326 |
T |
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| Q |
201 |
atacgatttaatcgaataccactgtctttcatc--agaaaagaataataggaggaacaaaat |
260 |
Q |
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| T |
48255327 |
atacgatttaatcgaataccactgtctttcatcagagaaaagaataataggaggaacaaaat |
48255388 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 3744491 - 3744426
Alignment:
| Q |
135 |
ttagcaatagaaggattgacatgatttcctatatacacatatacataaccatcatgaatagttctt |
200 |
Q |
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| T |
3744491 |
ttagtaatagaaggattcatatgatttgccatatacttatgtacataaccatcatgactagttctt |
3744426 |
T |
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