View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17549_high_5 (Length: 210)
Name: NF17549_high_5
Description: NF17549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17549_high_5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 36020313 - 36020114
Alignment:
| Q |
11 |
cttaatcaacacactctatctttctcaattgtttccaagagttaacaaatttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaatt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36020313 |
cttaatcaacacactctatctttgtcaattgtttccaagagttaacaaatttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaatt |
36020214 |
T |
|
| Q |
111 |
ctgaatccacacacacttcactcgtgtttcccagagattcaacccctcacaaatctctcgtgtttcctagaatcaaaaccaaaggctctagatgctaatt |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36020213 |
ctgaattcacacacacttcactcgtgtttcccagagattcaacccctcacaaatctctcgtgtttcctagaatcaaaaccaaaggctctagatgccaatt |
36020114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 210
Target Start/End: Original strand, 19795770 - 19795927
Alignment:
| Q |
51 |
gttaacaaatttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaattctgaatccacacacacttcactcgtgtttcccagagattc |
150 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | |||| ||||| || ||||||||||| |||| |||||||||||||||||| || |||||||||| |
|
|
| T |
19795770 |
gttaacaaattcgaaggaacaaagcctccattggcacccttgattacttagcaagaaattttgaaattacacacacttcactcgtgctttccagagattc |
19795869 |
T |
|
| Q |
151 |
aacccctcacaaatctctcgtgtttcctagaatcaaaaccaaaggctctagatgctaatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
19795870 |
-acccctcacaaatctctcgtgtttcctagaatcaaaa-caaaggctctagatgccaatt |
19795927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 2799534 - 2799400
Alignment:
| Q |
51 |
gttaacaaatttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaattctgaatccacacacacttcactcgtgtttcccagagattc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
2799534 |
gttaacaaatttgaaggaacaaaacctccattcatatccatgattgttcagcaagaaattatgaaatcacacagatttcactcgtgtttcccagagattt |
2799435 |
T |
|
| Q |
151 |
aacccctcacaaatctctcgtgtttcctagaatca |
185 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
2799434 |
aaaccctcacaaatctctcatgtttcccagaatca |
2799400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 26628339 - 26628465
Alignment:
| Q |
22 |
cactctatctttctcaattgtttcca---agagttaacaaatttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaattctgaatcc |
118 |
Q |
| |
|
||||| ||||||| |||||||||||| || || |||| |||||| ||||||||||||||||| |||||| |||||||| ||||||| ||| ||| |
|
|
| T |
26628339 |
cactccatctttcccaattgtttccatctagtgtcaacatatttgatggaacaaaacctccattggtacccgtgattgctactcaagaaactcttaattt |
26628438 |
T |
|
| Q |
119 |
acacacacttcactcgtgtttcccaga |
145 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26628439 |
tcacacacttcactcgtgtttcccaga |
26628465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 31864334 - 31864384
Alignment:
| Q |
121 |
acacacttcactcgtgtttcccagagattcaacccctcacaaatctctcgt |
171 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||| |||||||||| |
|
|
| T |
31864334 |
acacacttcactcgtgtttcccatagattgatcccctcactaatctctcgt |
31864384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 9921620 - 9921501
Alignment:
| Q |
68 |
aacaaaacctccattagtacccatgattgctcagcaagaaattctgaatccacacacacttcactcgtgtttcccagagattcaacccctcacaaatctc |
167 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||| || ||||||||||||||||||||||| | |||||| |||||||| || ||| |
|
|
| T |
9921620 |
aacaaaacctccattaacacccatgattgcttagcaag-aattcttaaatcacacacacttcactcgtgtttctccgagattgtacccctcataattctt |
9921522 |
T |
|
| Q |
168 |
tcgtgtttcctagaatcaaaa |
188 |
Q |
| |
|
| ||||||| | |||||||| |
|
|
| T |
9921521 |
taatgtttcccaaaatcaaaa |
9921501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 30807756 - 30807854
Alignment:
| Q |
50 |
agttaacaaatttgaaggaacaaaacctccattagtacccatgattgctcagcaagaaattctgaatccacacacacttcactcgtgtttcccagagat |
148 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |||| ||||||| |
|
|
| T |
30807756 |
agttaacaaatttgatggggcaaagcctccattagtacccatgattgctttgcaagaaattccaaaatttcacacacttcactcgtatttctcagagat |
30807854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 18191409 - 18191320
Alignment:
| Q |
122 |
cacacttcactcgtgtttcccagagattcaacccctcacaa-atctctcgtgtttcctagaatcaaaaccaaaggctctagatgctaatt |
210 |
Q |
| |
|
|||||||||||||||||||| ||| | | |||| |||||| ||||||||||||||| ||||| |||| | || ||||| ||||| |||| |
|
|
| T |
18191409 |
cacacttcactcgtgtttcctagaaaattcacccatcacaatatctctcgtgtttcccagaatgaaaaaccaaagctcttgatgccaatt |
18191320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 21462330 - 21462241
Alignment:
| Q |
122 |
cacacttcactcgtgtttcccagagattcaacccctcacaa-atctctcgtgtttcctagaatcaaaaccaaaggctctagatgctaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||| |||||||||||||| ||||| |||| | | ||||||||||| |||| |
|
|
| T |
21462330 |
cacacttcactcgtgtttcccagaaaattcacccctcacaatgtctctcgtgtttcccagaatgaaaaacccaagctctagatgccaatt |
21462241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 1813140 - 1813071
Alignment:
| Q |
118 |
cacacacacttcactcgtgtttcccagagattcaacccctcacaaatctctcgtgtttcctagaatcaaa |
187 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||| | |||||||||||||| | ||||||| |
|
|
| T |
1813140 |
cacacactcttcactcgtgtttcccagagatagatcccctcattattctctcgtgtttcccataatcaaa |
1813071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 32372157 - 32372246
Alignment:
| Q |
122 |
cacacttcactcgtgtttcccagag-attcaacccctcacaaat-ctctcgtgtttcctagaatcaaaaccaaaggctctagatgctaatt |
210 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||||| |||| |||||| ||||| |||||||| |||| |
|
|
| T |
32372157 |
cacacttcactcgtgtttcctagaatattca-cccctcacaattactctcgtgtttccctgaatgaaaacccaaggccctagatgccaatt |
32372246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University