View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17549_low_1 (Length: 553)
Name: NF17549_low_1
Description: NF17549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17549_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 21 - 537
Target Start/End: Complemental strand, 39581658 - 39581144
Alignment:
| Q |
21 |
aacggcccagaagatttacagcagacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaat |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
39581658 |
aacggcccagaagatttacaccagacacttttaccagagatgtttgagcagccagaaaccgagctgggaag-ataagtaaaggaatctatgaaataaaat |
39581560 |
T |
|
| Q |
121 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39581559 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
39581460 |
T |
|
| Q |
221 |
tagtagggtcattataactacaagggacaaatgtttgcttgtaggtactcattcttttgtagtacaaagtatttatgaaatgactgaacttagtgatcaa |
320 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39581459 |
tagtacggtcattataactacaagggacaaaggtttgcttgtaggtactcattcttttgtagttcaaagtatttatgaaatgactgaacttagtgatcaa |
39581360 |
T |
|
| Q |
321 |
cattctcttgagttgttttgtcgaaatgcctttggaaaaagcaatcctgaaacaggatatgaagccatgtcttctcgtgcggttggttatgcaaaaggtc |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39581359 |
cattctcttgagttgttttgtcgaaatgcctttggaaaaagcaatcctgaaacaggatatgaagccacgtcttctcgtgcggttggttatgcaaaaggtc |
39581260 |
T |
|
| Q |
421 |
ttccattggctttaaaagtaataggctccaatttggctactagaaaaagtttaaaagcttgggagcatgcgttgaaagattatgagaggattcctcgtaa |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39581259 |
ttccattggctttaaaagtaataggctccaatttggctactagaaaaagtttaaaagcttgggagcatgcgttgaaagattatgagaggattcctcgtaa |
39581160 |
T |
|
| Q |
521 |
aggggattcaagatgtg |
537 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
39581159 |
a-gggattcaagatgtg |
39581144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 43 - 519
Target Start/End: Original strand, 39620323 - 39620799
Alignment:
| Q |
43 |
agacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaatacaagcttggaaggaaaaaggt |
142 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| | |||||||| | ||||| || | |||||||| |
|
|
| T |
39620323 |
agacacttttatcagagatgtttgagaagccagataccgatctgggaagtacaagtaaaggaatcaaagaaataaagcaaaagctgggcaataaaaaggt |
39620422 |
T |
|
| Q |
143 |
tctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtagggtcattataactaca |
242 |
Q |
| |
|
||| |||||||||||||| |||||| | | |||||| || |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
39620423 |
tcttttggttcttgatgacgttgataacaaagaacaattaaaaaatttggcaggaggaagtgattggtttggcccaggtagtaggatcattataactaca |
39620522 |
T |
|
| Q |
243 |
agggacaaatgtttgcttgtaggtactcattcttttgtagtacaaagtatttatgaaatgactgaacttagtgatcaacattctcttgagttgttttgtc |
342 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| || |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
39620523 |
agggacaaaggtttgctcataggtactcattcttttgttgttcaaaagatttatgaaatgactgaacttaatgagaaagattctcttgagttgttttgtc |
39620622 |
T |
|
| Q |
343 |
gaaatgcctttggaaaaagcaatcctgaaacaggatatgaagccatgtcttctcgtgcggttggttatgcaaaaggtcttccattggctttaaaagtaat |
442 |
Q |
| |
|
| |||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
39620623 |
ggaatgcctttggaaagagccatcctgaaacaggctatgaagctgtgtcttctcgtgcggttggatatgccaagggtcttccattggctttaaaagtaat |
39620722 |
T |
|
| Q |
443 |
aggctccaatttggctactagaaaaagtttaaaagcttgggagcatgcgttgaaagattatgagaggattcctcgta |
519 |
Q |
| |
|
||| || ||||||| | | |||| ||||||| ||||||||| |||| |||||| |||| || |||||||| |||| |
|
|
| T |
39620723 |
aggttctaatttgggtggtggaaagagtttaagagcttgggaagatgcattgaaaaattacgacaggattccacgta |
39620799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 455
Target Start/End: Complemental strand, 7761765 - 7761716
Alignment:
| Q |
406 |
gttatgcaaaaggtcttccattggctttaaaagtaataggctccaatttg |
455 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||| |
|
|
| T |
7761765 |
gttatgcaaaaggtattccattggctttaaaagcaataggatccaatttg |
7761716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 7827978 - 7828036
Alignment:
| Q |
189 |
ttggcaggaggaagtgattggtttggtccaggtagtagggtcattataactacaaggga |
247 |
Q |
| |
|
||||| |||||| |||||||||||||| | ||||||||| |||| ||||| |||||||| |
|
|
| T |
7827978 |
ttggctggaggacgtgattggtttggttctggtagtaggatcataataacaacaaggga |
7828036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 451
Target Start/End: Complemental strand, 7754666 - 7754621
Alignment:
| Q |
406 |
gttatgcaaaaggtcttccattggctttaaaagtaataggctccaa |
451 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||| ||||| |
|
|
| T |
7754666 |
gttatgcaaagggtattccattggctttaagagtaataggatccaa |
7754621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University