View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17549_low_2 (Length: 510)

Name: NF17549_low_2
Description: NF17549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17549_low_2
NF17549_low_2
[»] chr4 (16 HSPs)
chr4 (196-493)||(6865424-6865730)
chr4 (1-205)||(6864477-6864681)
chr4 (394-490)||(50000743-50000839)
chr4 (394-492)||(12918190-12918288)
chr4 (394-490)||(3330143-3330239)
chr4 (398-490)||(12053604-12053696)
chr4 (408-490)||(56461939-56462021)
chr4 (393-490)||(25706702-25706799)
chr4 (394-490)||(31847280-31847376)
chr4 (417-487)||(25504489-25504559)
chr4 (417-487)||(55933303-55933373)
chr4 (417-490)||(132580-132653)
chr4 (417-490)||(16957729-16957802)
chr4 (394-489)||(30940557-30940652)
chr4 (446-484)||(53098605-53098643)
chr4 (417-490)||(18534593-18534666)
[»] chr5 (11 HSPs)
chr5 (394-490)||(43129727-43129822)
chr5 (394-490)||(27336886-27336982)
chr5 (394-490)||(35310641-35310737)
chr5 (394-490)||(13166728-13166824)
chr5 (395-490)||(433485-433580)
chr5 (404-489)||(32269625-32269710)
chr5 (417-490)||(33691896-33691969)
chr5 (417-490)||(34335530-34335603)
chr5 (417-490)||(38446359-38446432)
chr5 (394-482)||(15291844-15291932)
chr5 (396-489)||(9841146-9841240)
[»] chr1 (8 HSPs)
chr1 (394-490)||(34644759-34644855)
chr1 (414-484)||(25375671-25375741)
chr1 (396-486)||(37932038-37932128)
chr1 (409-490)||(4861822-4861903)
chr1 (417-489)||(29169635-29169707)
chr1 (418-477)||(22375479-22375538)
chr1 (396-490)||(37200174-37200267)
chr1 (417-489)||(28040968-28041040)
[»] chr2 (14 HSPs)
chr2 (394-489)||(19161601-19161696)
chr2 (394-490)||(27502554-27502650)
chr2 (394-489)||(17344832-17344927)
chr2 (394-487)||(9675040-9675133)
chr2 (398-490)||(2888705-2888797)
chr2 (394-490)||(28225193-28225289)
chr2 (394-490)||(44686612-44686707)
chr2 (394-489)||(4412884-4412979)
chr2 (394-489)||(23484756-23484851)
chr2 (442-489)||(18744820-18744867)
chr2 (394-489)||(41867726-41867821)
chr2 (417-490)||(13146975-13147048)
chr2 (427-478)||(44720526-44720577)
chr2 (394-490)||(3825920-3826016)
[»] chr8 (9 HSPs)
chr8 (394-492)||(39434858-39434956)
chr8 (394-490)||(35739805-35739901)
chr8 (417-490)||(25021655-25021728)
chr8 (420-490)||(42921971-42922041)
chr8 (417-489)||(500421-500493)
chr8 (450-490)||(38815477-38815517)
chr8 (444-490)||(3188162-3188208)
chr8 (417-490)||(11611089-11611162)
chr8 (394-490)||(39671005-39671101)
[»] chr3 (7 HSPs)
chr3 (392-486)||(39583045-39583139)
chr3 (417-490)||(29861990-29862063)
chr3 (393-482)||(37992533-37992622)
chr3 (395-489)||(49018157-49018251)
chr3 (415-492)||(54508224-54508300)
chr3 (393-489)||(53785903-53785999)
chr3 (394-479)||(52411720-52411805)
[»] chr6 (10 HSPs)
chr6 (393-490)||(34304689-34304786)
chr6 (416-490)||(33220551-33220625)
chr6 (417-490)||(357558-357631)
chr6 (393-489)||(32115883-32115979)
chr6 (394-489)||(12401525-12401620)
chr6 (417-490)||(29337924-29337997)
chr6 (431-490)||(959773-959832)
chr6 (431-490)||(28543568-28543627)
chr6 (442-489)||(4206462-4206509)
chr6 (396-489)||(45489-45582)
[»] chr7 (8 HSPs)
chr7 (394-490)||(5825464-5825560)
chr7 (394-490)||(28517105-28517201)
chr7 (417-489)||(45613683-45613755)
chr7 (417-489)||(4501452-4501524)
chr7 (395-489)||(983143-983237)
chr7 (417-486)||(43857071-43857140)
chr7 (417-489)||(19277487-19277559)
chr7 (396-490)||(10905298-10905390)
[»] scaffold1768 (1 HSPs)
scaffold1768 (443-487)||(51-95)
[»] scaffold0148 (1 HSPs)
scaffold0148 (417-481)||(33453-33517)
[»] scaffold0186 (1 HSPs)
scaffold0186 (396-488)||(19916-20008)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 196 - 493
Target Start/End: Original strand, 6865424 - 6865730
Alignment:
Q  196 ttattttaagttcacgtcccaatccataaggggcaacactccatagctgaatctacgtaggaacagggtttaagtccacacggtcttaatataattagat 295  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6865424 ttattttaagttcacgtcccaatccataagtggcaacactccatagctgaatctacgtaggaacagggtttaagtccacacggtcttaatataattagat 6865523  T
Q  296 cac---------aataaagaaagcatagtagtactcttggaatttacatcaacaataaattagttcatcccctaaaaaatatattagttcaaattatata 386  Q
    |||         ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6865524 cactcttacaccaataaagaaagcatagtagtactcttggaatgtacatcaacaataaattagttcatcccctaaaaaatatattagttcaaattatata 6865623  T
Q  387 taatctatgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatg 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6865624 taatctatgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatg 6865723  T
Q  487 tgtgtat 493  Q
    |||||||    
T  6865724 tgtgtat 6865730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 6864477 - 6864681
Alignment:
Q  1 attattaccattgttaatgagatattttagcaatgtacgctcttctcacactcgttagttagcaattacggtgtcaggtgtgttagttttgctaaaatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6864477 attattaccattgttaatgagatattttagcaatgtacgctcttctcacactcgttagttagcaattacggtgtcaggtgtgttagttttgctaaaatac 6864576  T
Q  101 aggctcgttgaaataaaaggagatggatcaatttaatagagactacaaaatatataataaattcaaaacaacattatttggagcatgacactatattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6864577 aggctcgttgaaataaaaggagatggatcaatttaatagagactacaaaatatataataaattcaaaacaacattatttggagcatgacactatattatt 6864676  T
Q  201 ttaag 205  Q
    |||||    
T  6864677 ttaag 6864681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 50000743 - 50000839
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||||||||| ||||||||||  ||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  50000743 tgtgaactttctgactgacccactagatagaagatcgacacttaggcctgcggatgttatggtgtacggatgggttggaggaaaacatgcatgtgtg 50000839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 394 - 492
Target Start/End: Original strand, 12918190 - 12918288
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtgta 492  Q
    |||||||||||||||||| | | |||||||||||| ||||||||||  || |||||| ||| |||| | ||||||| ||||||||||||||||||||||    
T  12918190 tgtgaactttctaactgacccactagatagaagatcgacacttaggcctgtggatgtcatggtgtatggatgggtaagaggaaaacatgcatgtgtgta 12918288  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 3330239 - 3330143
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | ||||||||||||  ||||||||| |||| ||||||||| |||||| |||| | |||||||||| ||||||||||    
T  3330239 tgtgaactttctgactgacccactagatagaagatcaacacttaggcatgcagatgttatggtgtacggatggattggaggaaaacgtgcatgtgtg 3330143  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 490
Target Start/End: Complemental strand, 12053696 - 12053604
Alignment:
Q  398 aactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||| || ||||||| | |||||||||||| || |||| ||| ||| ||||||||| |||||  ||||||||||||||||||||||||||||    
T  12053696 aacttcctgactgatccactagatagaagatcgagactttggtctgcagatgttatgttgtacagatgggtaggaggaaaacatgcatgtgtg 12053604  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 490
Target Start/End: Original strand, 56461939 - 56462021
Alignment:
Q  408 ctgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||| | |||||||||||| |||||||| | ||||| |||||||| |||||| ||| ||||| ||||||||||||||||||    
T  56461939 ctgatccactagatagaagatcgacacttaagcatgcgaatgttatggtgtacggatgagtaggtggaaaacatgcatgtgtg 56462021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 490
Target Start/End: Complemental strand, 25706799 - 25706702
Alignment:
Q  393 atgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||||||| ||||| | | |||||||||||| |||||||| |  | || |||||||| |||||  ||||||||||| ||||||||||||||||    
T  25706799 atgtgaactttctgactgacccactagatagaagatcgacacttaagcctacgtatgttatggtgtacagatgggtaggagaaaaacatgcatgtgtg 25706702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 31847376 - 31847280
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||| ||||||||||||||||  ||| ||| ||||| |||||  |||| | |||||||||||||||||||||    
T  31847376 tgtgaactttctgactgacccactagataaaagattgacacttaggcctgcagatattatggtgtacagatggattggaggaaaacatgcatgtgtg 31847280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 25504559 - 25504489
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgt 487  Q
    |||||||||| || ||||| ||  |||||||||||||| |||||| ||||||||||| |||||||||||||    
T  25504559 tagatagaagtttaacactcagacatgcggatgttatggtgtacggatgggtaggagaaaaacatgcatgt 25504489  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 55933303 - 55933373
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgt 487  Q
    |||||||||||| |||||||||||  || ||||||||| | |||| |||||| ||||||||||||| ||||    
T  55933303 tagatagaagatcgacacttaggtccgcagatgttatggtctacggatgggttggaggaaaacatgaatgt 55933373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 132653 - 132580
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||||| || |||| ||||||||| |||||  ||  |||||||||||| |||||||||||    
T  132653 tagatagaagatcgacacttcggcatgcagatgttatggtgtacagatacgtaggaggaaaatatgcatgtgtg 132580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 16957802 - 16957729
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||| |||||  |||||||||  ||| ||||||||| |||||| ||||||||| | ||||||||||||||||    
T  16957802 tagataaaagatcaacacttaggcctgcagatgttatggtgtacggatgggtaggtgtaaaacatgcatgtgtg 16957729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 30940557 - 30940652
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||| || ||||| | | ||||||||||||  ||||| |||  | || |||||||| |||||| ||||||||| ||||||||||| |||||    
T  30940557 tgtgaacttcctgactgacccactagatagaagatcaacactaaggcctacgaatgttatggtgtacgaatgggtaggtggaaaacatgcttgtgt 30940652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 484
Target Start/End: Complemental strand, 53098643 - 53098605
Alignment:
Q  446 gatgttatgatgtacgtatgggtaggaggaaaacatgca 484  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  53098643 gatgttatggtgtacggatgggtaggaggaaaacatgca 53098605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 18534666 - 18534593
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||| |||||| ||||||||||  | |  |||||||| | |||| |||||||| |||||||||||||||||||    
T  18534666 tagattgaagatcgacacttaggcctacaaatgttatggtatacggatgggtagaaggaaaacatgcatgtgtg 18534593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 43129822 - 43129727
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||| |||| |||||||||||||||| |||| ||||||||||| |||||||||||    
T  43129822 tgtgaactttcttactgatctactagatagaagatcgacacttaggcatgcagatgttatgatgtacggatggataggaggaaaa-atgcatgtgtg 43129727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 27336982 - 27336886
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||||||||| ||||||||||  ||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  27336982 tgtgaactttctgactgacccactagatagaagatcgacacttaggcctgcggatgttatggtgtacggatgggttggaggaaaacatgcatgtgtg 27336886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 35310737 - 35310641
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||| |||||||| | | ||||||||||||  |||||||||  |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  35310737 tgtgaacttcctaactgacccactagatagaagatcaacacttaggcttgcggatgttatgatgtacggatgggttggaggaaaacatgcatgtgtg 35310641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 13166728 - 13166824
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||||||||| |||||||| | |||||||||||||| | |||| |||||| |||||||||||||||||||||    
T  13166728 tgtgaactttctgactgacccactagatagaagatcgacacttaagcatgcggatgttatggtctacggatgggttggaggaaaacatgcatgtgtg 13166824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 490
Target Start/End: Complemental strand, 433580 - 433485
Alignment:
Q  395 gtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||||| ||||  | | || |||||||||  ||||||||| |||||||||||||| |||||  |||||| ||||||||| |||||||||||    
T  433580 gtgaactttctgactggcccactaaatagaagatccacacttaggcatgcggatgttatggtgtacagatgggttggaggaaaatatgcatgtgtg 433485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 489
Target Start/End: Original strand, 32269625 - 32269710
Alignment:
Q  404 ctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||||||| | | ||||||||||||  ||||| |  | ||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  32269625 ctaactgacccactagatagaagatcaacactcaaatctgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgt 32269710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 33691896 - 33691969
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| |||||||| |  |||  |||||||| |||||| |||||| |||||||||||||||||||||    
T  33691896 tagatagaagatcgacacttaagcctgcaaatgttatggtgtacggatgggttggaggaaaacatgcatgtgtg 33691969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 34335603 - 34335530
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||||||||  |||  |||||||| |||||  ||| ||||||||||||||||||||||||    
T  34335603 tagatagaagatcgacacttaggcttgcatatgttatggtgtacaaatgagtaggaggaaaacatgcatgtgtg 34335530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 38446432 - 38446359
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||| || |||||||||| ||||  |||||||| |||||| |||||| |||| ||||||||||||||||    
T  38446432 tagatagaatatcgacacttaggcatgcaaatgttatggtgtacggatgggttggagtaaaacatgcatgtgtg 38446359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 15291844 - 15291932
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatg 482  Q
    ||||||||| | |||||| | | ||||||||||||  ||||| |||  |||| |||||||| ||||||  |||||||||||||||||||    
T  15291844 tgtgaacttcccaactgacccactagatagaagatcaacactcaggcctgcgaatgttatggtgtacggctgggtaggaggaaaacatg 15291932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 9841146 - 9841240
Alignment:
Q  396 tgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtac-gtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||| || ||| | ||| |||||||||||| ||||||||||  ||||||||||||| ||| | | |||||||| || ||||||||| |||||    
T  9841146 tgaacttcctgacttacctactagatagaagatcgacacttaggcctgcggatgttatggtgtgcgggatgggtagaagaaaaacatgcgtgtgt 9841240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 34644855 - 34644759
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||||||||| ||||||||||||||||||||||||| |||| | |||||  |||||||||||||||||||||    
T  34644855 tgtgaactttctgactgacccactagatagaagatcgacacttaggtatgcggatgttatggtgtatggatgggctggaggaaaacatgcatgtgtg 34644759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 484
Target Start/End: Original strand, 25375671 - 25375741
Alignment:
Q  414 tattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgca 484  Q
    ||||||||||||||||||||||||||| ||| ||||||||| | |||| |||||||| |||||||||||||    
T  25375671 tattagatagaagattgacacttaggtctgcagatgttatggtatacggatgggtagaaggaaaacatgca 25375741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 486
Target Start/End: Original strand, 37932038 - 37932128
Alignment:
Q  396 tgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatg 486  Q
    |||||||||| || || | ||||||||||| || ||||||||||  ||||||||||||||||||| |||||  ||||||||||||||||||    
T  37932038 tgaactttctgaccgacccattagatagaaaatcgacacttaggcctgcggatgttatgatgtacatatggacaggaggaaaacatgcatg 37932128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 490
Target Start/End: Original strand, 4861822 - 4861903
Alignment:
Q  409 tgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||| ||||||||| |||||||  |  | | ||||||||| |||||| ||||||||||| ||||||||||||||||    
T  4861822 tgatctattaaatagaagatcgacacttcagcctacagatgttatggtgtacggatgggtaggagaaaaacatgcatgtgtg 4861903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 29169635 - 29169707
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||| |||||||  ||||| |||  ||||||||||||| |||||| || ||||||||||||||||||||||||    
T  29169635 tagaaagaagatcaacactcaggcctgcggatgttatggtgtacggataggtaggaggaaaacatgcatgtgt 29169707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 22375479 - 22375538
Alignment:
Q  418 agatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaa 477  Q
    ||||||||||| ||||||||||  |||| |||||||| |||||| || ||||||||||||    
T  22375479 agatagaagatcgacacttaggcctgcgaatgttatggtgtacgaattggtaggaggaaa 22375538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 490
Target Start/End: Complemental strand, 37200267 - 37200174
Alignment:
Q  396 tgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||||  |||| | | ||||||||||||||||||||| || ||   ||||||||  ||||  ||||||| ||||||||||||||||||||    
T  37200267 tgaactttctgtctgacccactagatagaagattgacacttaagtttgaa-atgttatggggtaccaatgggtaagaggaaaacatgcatgtgtg 37200174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 28040968 - 28041040
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||||||  ||||| |||  ||| ||||||||| |||||  ||||||||| ||||||||||| |||||    
T  28040968 tagatagaagatcaacactcaggcctgcagatgttatggtgtacagatgggtaggtggaaaacatgcttgtgt 28041040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 19161601 - 19161696
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||| | |||||||| | ||||||||||||||  ||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  19161601 tgtgaacgtcctaactgacccattagatagaagatcaacactcaggcatgcggatgttatgatgtaaggatgggtaggaggaaaacatgcatgtgt 19161696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 27502650 - 27502554
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||  ||||| ||||||||||  ||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  27502650 tgtgaactttctgactgacccactagatgcaagatcgacacttaggcctgcggatgttatggtgtacggatgggttggaggaaaacatgcatgtgtg 27502554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 489
Target Start/End: Complemental strand, 17344927 - 17344832
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||||||||||| ||||| |   |||| |||||||  ||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||    
T  17344927 tgtgaactttctgactgacccgctagaaagaagatcaacactcaggcatgcggatgttatggtgtacggatgggtaggaggaaaacatgcatgtgt 17344832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 487
Target Start/End: Complemental strand, 9675133 - 9675040
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgt 487  Q
    |||||||||||| || || | |||| ||| ||||| |||||||||  |||| |||||||||||||||| ||| |||||||||||||||||||||    
T  9675133 tgtgaactttctgaccgaccgattaaataaaagatcgacacttagacatgcagatgttatgatgtacgaatgagtaggaggaaaacatgcatgt 9675040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 490
Target Start/End: Complemental strand, 2888797 - 2888705
Alignment:
Q  398 aactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||| |||||||||||||||||| || ||  |||||||||| ||| ||||||||| | ||| |||||||| |||| |||||||||||||||    
T  2888797 aactttttaactgatctattagatataaaatatacacttaggtctgcagatgttatggtatacatatgggtaagaggtaaacatgcatgtgtg 2888705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 28225289 - 28225193
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||| | | | ||||||||| || ||||||||||  | ||||||||||| |||||| |||||| |||||||||||||||||||||    
T  28225289 tgtgaactttctgacttacccactagatagaatatcgacacttaggcctacggatgttatggtgtacggatgggttggaggaaaacatgcatgtgtg 28225193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 44686707 - 44686612
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||  ||||||||||||| |||||  || | | ||| |||||||||||||||||    
T  44686707 tgtgaactttgtgactgatctactagatagaagattgacacttaggcctgcggatgttatggtgtacaaat-gtttggacgaaaacatgcatgtgtg 44686612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 4412884 - 4412979
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||| || ||||| | | ||||||||||||  ||||| |||  ||||||||||||| |||||| ||||||||| ||||||||||| |||||    
T  4412884 tgtgaacttcctgactgacccactagatagaagatcaacactcaggcctgcggatgttatggtgtacggatgggtaggtggaaaacatgcttgtgt 4412979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 23484756 - 23484851
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||| || | ||| ||| || |||||||||  ||||| | | ||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  23484756 tgtgaacttcctgattgacctactatatagaagatcaacactcaagcatgcatatgttatgatgtacggatgggtaggaggaaaacatgcatgtgt 23484851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 489
Target Start/End: Original strand, 18744820 - 18744867
Alignment:
Q  442 tgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||||    
T  18744820 tgcgggtgttatggtgtacggatgggtaggaggaaaacatgcatgtgt 18744867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 41867726 - 41867821
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||| || ||||| | | ||||||||||||  ||||| |||  ||||||||||||| |||||  ||||||||| ||||||||||| |||||    
T  41867726 tgtgaacttcctgactgacccactagatagaagatcaacactcaggcctgcggatgttatggtgtacagatgggtaggtggaaaacatgcttgtgt 41867821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 13146975 - 13147048
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| |||| ||||| |||  ||||||||| |||||| |||||||||| ||||||| | |||||||    
T  13146975 tagatagaagatcgacatttaggcatgtagatgttatggtgtacgcatgggtaggaagaaaacacggatgtgtg 13147048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 478
Target Start/End: Complemental strand, 44720577 - 44720526
Alignment:
Q  427 attgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaa 478  Q
    |||||||||||||| |||||||||| ||||||||| |||| ||||| |||||    
T  44720577 attgacacttaggtctgcggatgttttgatgtacgaatggataggatgaaaa 44720526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 3826016 - 3825920
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||||||||| |||  ||| |  || |||||||| | |||||  ||| ||||||| ||||||||||||||||    
T  3826016 tgtgaactttctgactgacccactagatagaagatcgacctttatgcttgtggatgttaaggtgtacaaatgagtaggagaaaaacatgcatgtgtg 3825920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 492
Target Start/End: Complemental strand, 39434956 - 39434858
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtgta 492  Q
    |||||||||||| ||||| | | |||||||||||| ||||||||||| ||  ||||||||| |||||| |||||| |||||||||||||||||||||||    
T  39434956 tgtgaactttctgactgacccactagatagaagatcgacacttaggtctgtcgatgttatggtgtacggatgggttggaggaaaacatgcatgtgtgta 39434858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 35739805 - 35739901
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | ||| | ||||||||  ||||||||| |||| ||||||||| |||| | ||||||||||||||||||||||||||||    
T  35739805 tgtgaactttctgactgacccatttggtagaagatcaacacttaggcatgcagatgttatggtgtatgaatgggtaggaggaaaacatgcatgtgtg 35739901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 25021655 - 25021728
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| | ||||||||  ||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  25021655 tagatagaagatcgtcacttaggcctgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 25021728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 490
Target Start/End: Original strand, 42921971 - 42922041
Alignment:
Q  420 atagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||||||||| |||||  ||||||||| |||||  ||||||||||||||||||  ||||||||    
T  42921971 atagaagattgacacttacgtatgtagatgttatggtgtacagatgggtaggaggaaaacaaacatgtgtg 42922041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 500493 - 500421
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||||||  ||||| |||  ||||||||||||| |||| | |||||||| ||||||||||||||||||    
T  500493 tagatagaagatcaacactcaggcctgcggatgttatgttgtatggatgggtagaaggaaaacatgcatgtgt 500421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 38815517 - 38815477
Alignment:
Q  450 ttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  38815517 ttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 38815477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 3188208 - 3188162
Alignment:
Q  444 cggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||||| |||||| |||| | |||||||||||||||||||||    
T  3188208 cggatgttatggtgtacggatggattggaggaaaacatgcatgtgtg 3188162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 11611089 - 11611162
Alignment:
Q  417 tagatagaagattgacactta-ggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||||||||| ||||| ||| |||  |||||||| |||| | ||||||||| ||||||||||||||||||    
T  11611089 tagatagaagattgaaacttaaggtctgcaaatgttatggtgtatgaatgggtagg-ggaaaacatgcatgtgtg 11611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 39671005 - 39671101
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||| ||||||||||| | | ||||||  |||| |||| |||||| ||||||||||| | |||    ||||||||||| |||| |||||||||||    
T  39671005 tgtgaaatttctaactgacccactagatattagatcgacatttaggtctgcggatgttacggtgtctagatgggtaggagaaaaatatgcatgtgtg 39671101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 486
Target Start/End: Original strand, 39583045 - 39583139
Alignment:
Q  392 tatgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatg 486  Q
    |||||||||||||| | ||| | | |||||||||||| |||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||    
T  39583045 tatgtgaactttctgattgacccactagatagaagatcgacacttaggcatgcggatgttatagtgtacggatgggtaggaggaaaacatgcatg 39583139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 417 - 490
Target Start/End: Complemental strand, 29862063 - 29861990
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| |||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  29862063 tagatagaagatcgacacttaggcatgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtg 29861990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 393 - 482
Target Start/End: Complemental strand, 37992622 - 37992533
Alignment:
Q  393 atgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatg 482  Q
    ||||||||||||| ||||| | | | |||||||||| ||||||||||| ||  |||||||||||||||| ||||||||||||||||||||    
T  37992622 atgtgaactttctcactgacccacttgatagaagatggacacttaggtctgtagatgttatgatgtacggatgggtaggaggaaaacatg 37992533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 489
Target Start/End: Complemental strand, 49018251 - 49018157
Alignment:
Q  395 gtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||||||| || ||||| | | ||||||||||||| ||||| ||| |||| ||||||||| |||||| || |||| |||||||||||||||||||    
T  49018251 gtgaacttcctgactgacccactagatagaagattaacactcaggcatgcagatgttatggtgtacggattggtacgaggaaaacatgcatgtgt 49018157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 492
Target Start/End: Original strand, 54508224 - 54508300
Alignment:
Q  415 attagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtgta 492  Q
    |||||||||||| |||||| || || |||||||||||||| |||||| ||||||| || |||||||||||||||||||    
T  54508224 attagatagaaggttgacatttcggcatgcggatgttatggtgtacggatgggta-gaagaaaacatgcatgtgtgta 54508300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 53785999 - 53785903
Alignment:
Q  393 atgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||||||||| |||||||| |   |||| | |||||  ||||| ||| ||||||||||| || |||||| |||||||||||||||||||||||||||    
T  53785999 atgtgaacttcctaactgacccgctagaaataagatcaacactcaggcatgcggatgttttggtgtacggatgggtaggaggaaaacatgcatgtgt 53785903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 52411720 - 52411805
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaac 479  Q
    |||||||||| ||||||| | | |||||||||||||||| ||||||  ||| ||||||||||||| || ||||  |||||||||||    
T  52411720 tgtgaactttttaactgacccactagatagaagattgacgcttaggcctgcagatgttatgatgtccgaatggacaggaggaaaac 52411805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 393 - 490
Target Start/End: Complemental strand, 34304786 - 34304689
Alignment:
Q  393 atgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||||||| ||||| | | |||||||||||| ||||||||||  ||||||||||||| |||||| |||||  |||||||||||||||||||||    
T  34304786 atgtgaactttctgactgacccactagatagaagatcgacacttaggcctgcggatgttatggtgtacggatgggctggaggaaaacatgcatgtgtg 34304689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 490
Target Start/End: Original strand, 33220551 - 33220625
Alignment:
Q  416 ttagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||||||||||| |||  ||| |||||||||||||||| ||| || |||||||||||||||||||||    
T  33220551 ttagatagaagattgacactcaggcctgcagatgttatgatgtacggatgagttggaggaaaacatgcatgtgtg 33220625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 357558 - 357631
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||||||||||||| ||||||||| |||| | |||||| |||| ||||||||||||||||    
T  357558 tagatagaagatcgacacttaggtatgcagatgttatggtgtatggatgggttggagcaaaacatgcatgtgtg 357631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 489
Target Start/End: Complemental strand, 32115979 - 32115883
Alignment:
Q  393 atgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||||||||| || ||||| ||| ||||||||||||  ||||| |||  ||||||||||||| |||||  ||| |||||||||||||||||||||||    
T  32115979 atgtgaacttcctgactgacctactagatagaagatcaacactcaggcctgcggatgttatggtgtacagatgagtaggaggaaaacatgcatgtgt 32115883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 489
Target Start/End: Complemental strand, 12401620 - 12401525
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||| || ||||| ||| ||||||| ||||  | ||||| || |||  |||||||| |||||| |||||||||||||||||||||||||||    
T  12401620 tgtgaacttcctgactgacctactagatagcagatcaagacttaagtctgcaaatgttatggtgtacggatgggtaggaggaaaacatgcatgtgt 12401525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 29337924 - 29337997
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||| | ||||||||||  ||| ||||||||| ||| |  ||||||||||||||||||||||||||||    
T  29337924 tagatagaagttcgacacttaggcctgcagatgttatggtgtgcagatgggtaggaggaaaacatgcatgtgtg 29337997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 959832 - 959773
Alignment:
Q  431 acacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||| ||| ||||||||||||   |||||| ||||||||||||||||||||||||||||    
T  959832 acactcaggcatgcggatgttacagtgtacggatgggtaggaggaaaacatgcatgtgtg 959773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 28543627 - 28543568
Alignment:
Q  431 acacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||| ||| |||| |||||||||||||||  |||| |||||||||||||||||||||||    
T  28543627 acactcaggcatgcagatgttatgatgtacagatggataggaggaaaacatgcatgtgtg 28543568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 489
Target Start/End: Original strand, 4206462 - 4206509
Alignment:
Q  442 tgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||||||| |||||  |||||| ||||||||||||||||||||    
T  4206462 tgcggatgttatggtgtacaaatgggttggaggaaaacatgcatgtgt 4206509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 45489 - 45582
Alignment:
Q  396 tgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||||||||| ||||| | | ||||||||||||  ||||| |||  ||| ||||| ||| |||||| ||||||||  ||||||||||| |||||    
T  45489 tgaactttctgactgacccactagatagaagatcaacactcaggcctgcagatgtgatggtgtacggatgggtagatggaaaacatgcttgtgt 45582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 5825560 - 5825464
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| | ||| | | |||||||||||| ||||| ||||  ||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  5825560 tgtgaactttctgattgacccactagatagaagatcgacacataggcctgcggatgttatggtgtacgaatgggttggaggaaaacatgcatgtgtg 5825464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 28517105 - 28517201
Alignment:
Q  394 tgtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    |||||||||||| ||||| | | |||||||||||| ||||||||||  |||  |||||||| |||||| |||||| ||||||||||||| |||||||    
T  28517105 tgtgaactttctgactgacccactagatagaagatcgacacttaggcctgcaaatgttatggtgtacggatgggttggaggaaaacatgtatgtgtg 28517201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 45613683 - 45613755
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||| |||||||  ||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  45613683 tagaaagaagatcaacactcaggcctgcggatgttatgatgtacgaatgggtaggaggaaaacatgcatgtgt 45613755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 4501524 - 4501452
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||||||  ||||| |||   |||||||||||| |||||| || ||||||||||||||||||||||||    
T  4501524 tagatagaagataaacactcaggccagcggatgttatggtgtacggataggtaggaggaaaacatgcatgtgt 4501452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 489
Target Start/End: Complemental strand, 983237 - 983143
Alignment:
Q  395 gtgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    |||||||| |||||||| | | ||||||||||||  ||||| ||| || |||| ||||||||||||| ||| ||||| | ||||||||| |||||    
T  983237 gtgaacttcctaactgacccactagatagaagatcaacactcaggcatccggaagttatgatgtacgaatgagtaggtgaaaaacatgcttgtgt 983143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 43857140 - 43857071
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatg 486  Q
    ||||||||||||  |||||||||  ||| ||||||||| |||||| ||||||||||| ||||||| ||||    
T  43857140 tagatagaagatcaacacttaggcctgcagatgttatggtgtacggatgggtaggagaaaaacatacatg 43857071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 19277559 - 19277487
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgt 489  Q
    ||||||||||||  ||||| |||  ||||||||||||| | |||| ||||||||| ||||||||||| |||||    
T  19277559 tagatagaagatcaacactcaggcctgcggatgttatggtctacggatgggtaggtggaaaacatgcttgtgt 19277487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 490
Target Start/End: Complemental strand, 10905390 - 10905298
Alignment:
Q  396 tgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtgtg 490  Q
    ||||||||||   ||||| | |||||| ||||| ||||||||||  ||| ||||||  | |||||| |||| |||||||||||||||||||||||    
T  10905390 tgaactttcttgttgatccactagatataagatcgacacttaggcctgcagatgtt--ggtgtacggatggataggaggaaaacatgcatgtgtg 10905298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 51 - 95
Alignment:
Q  443 gcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgt 487  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  51 gcggatgttatgatgtacggatgggtaggaggaaaacatgcatgt 95  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 33517 - 33453
Alignment:
Q  417 tagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacat 481  Q
    ||||||||||||  ||||| ||| |||||||||||||| |||||| |||||||||||||||||||    
T  33517 tagatagaagatcaacactcaggcatgcggatgttatggtgtacggatgggtaggaggaaaacat 33453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 488
Target Start/End: Complemental strand, 20008 - 19916
Alignment:
Q  396 tgaactttctaactgatctattagatagaagattgacacttaggtatgcggatgttatgatgtacgtatgggtaggaggaaaacatgcatgtg 488  Q
    |||||||  ||||||| | | ||||||||||||  ||||||||   ||  ||||||||| |||||| || |||||||||||||||||||||||    
T  20008 tgaacttcttaactgacccactagatagaagatgaacacttagacctgtagatgttatggtgtacggataggtaggaggaaaacatgcatgtg 19916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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