View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17549_low_3 (Length: 386)
Name: NF17549_low_3
Description: NF17549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17549_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 16374813 - 16375129
Alignment:
| Q |
8 |
gtatataatagtgggagttgtcaaggccccgtcccatatccatcggtcgatgggctcctc--ctgggatatgattatcgttt-cttgccatatcaaacct |
104 |
Q |
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| T |
16374813 |
gtatatagtagtgggagtcgtcaaggccccgtcccatatccatcggtcgatgggctcctcaactgggatatgattatgattttcttgccatatcaaacct |
16374912 |
T |
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| Q |
105 |
aaaagggaaagatggaaaaataaattaaaattcaaatcaacctttccttcactgatcgagtcgatttgatgaggagaagtataaatgtttctcgctaacg |
204 |
Q |
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| T |
16374913 |
aaaagggaaagatggaaaaataaattaaaattcaaatcaccctttccttcactgatcgagtcgatttgatgaggagaagtataaatgtttctcgctaacg |
16375012 |
T |
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| Q |
205 |
acgagacccctatggaaaaataaagacacccaaatacctaaaaattctaaggccacaatggtgaccaccttttacagtggaacttgattagactctaagt |
304 |
Q |
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| T |
16375013 |
acgagacccctatggaaaaataaagacacccaaatacctaaaaattctaaggccacaatggcgaccaccttttactg-----------tagactctaagt |
16375101 |
T |
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| Q |
305 |
cataaaccagcgtctaacatcagcattc |
332 |
Q |
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| T |
16375102 |
cataaaccaccgtctaacatcagcattc |
16375129 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 15876646 - 15876565
Alignment:
| Q |
91 |
gccatatcaaacctaaaagggaaagatggaaaaa--taaattaaaattcaaatcaacctttccttcactgatcgagtcgatt |
170 |
Q |
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| T |
15876646 |
gccatataaaacctaaaagggaaagatgaaaaaaatgaatttaacattcaaatccacccttccttcaccgatcaggtcgatt |
15876565 |
T |
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