View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755-Insertion-1 (Length: 435)
Name: NF1755-Insertion-1
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755-Insertion-1 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0048 (1 HSPs) |
| |
|
| [»] scaffold1405 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 9695401 - 9694987
Alignment:
| Q |
18 |
taacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataataaa |
117 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||| | ||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
9695401 |
taacatcctaattcccaacgttgatttaataaataatgtgaataaatttaaataaaaaggatgttacatatactcatcaattattcattcgaataataaa |
9695302 |
T |
|
| Q |
118 |
taatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatgat |
217 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9695301 |
taatatgtcatatttcataatgcggaaaatacttcaaaaatatttcataaaatgaag---tctctttctcaatcgtcattgtggaaaatatcataatgat |
9695205 |
T |
|
| Q |
218 |
ctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataatta |
317 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9695204 |
ctcaaatacttaagattcctaaaattaaacattcaacatttgacctcaaccctagtgttacagatcagagcacgtgattattcgactacataaataatta |
9695105 |
T |
|
| Q |
318 |
gataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagacacc |
417 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||| |||||||||| | |
|
|
| T |
9695104 |
gataatagctacggaagtatatctctttcgccaccttctaaacgtcccgcaaactaaagctcctcgtcctgagtgtatgtaccccaagagtacagacatc |
9695005 |
T |
|
| Q |
418 |
ataatacacaacaacaac |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9695004 |
ataatacacaacaacaac |
9694987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 11802922 - 11802503
Alignment:
| Q |
15 |
atgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataat |
114 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
11802922 |
atgtaacaccctaatttccaacgttgatttaataaatagtgcgaataaatttaaacaaaaaggatgttacgcatactcatcaatcattcattcaaataat |
11802823 |
T |
|
| Q |
115 |
aaataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataat |
214 |
Q |
| |
|
|| ||||| || |||||||| ||| ||||||||||| |||||||||||||||||| || ||| | ||| |||||||| ||||||||||||||||||| |
|
|
| T |
11802822 |
aa-taatatgtcatatttcagaatacggaaaatactttaaaaatatttcataaaataaacatgtctgattcgcaatcgtcgttgtggaaaatatcataat |
11802724 |
T |
|
| Q |
215 |
gatctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataa |
314 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11802723 |
gatttcaaatatttaagattcttaaaattaaacattcaacgtttgactccaaccctagtgttatagatcagagcatatgattattcgactacataaataa |
11802624 |
T |
|
| Q |
315 |
ttagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagac |
414 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| |||| ||||||| |||| ||||||||||| ||||||| |||| ||||| ||||||||| |
|
|
| T |
11802623 |
ttagataatagctacggaagtatatctccgtcgccaccttataaacatcccgcacactatagctcctcgtcctgagtgtctgtatcccaagagtacagac |
11802524 |
T |
|
| Q |
415 |
accataatacacaacaacaac |
435 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
11802523 |
accataatacataacaacaac |
11802503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 12244752 - 12244953
Alignment:
| Q |
15 |
atgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataat |
114 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| | | ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
12244752 |
atgtaacaccctaatttccaacgttgatttaataaataatgcaaataaatttaaacaaaaag-atgttacaaatactcatcaatcattcattcgaataat |
12244850 |
T |
|
| Q |
115 |
aaataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataat |
214 |
Q |
| |
|
||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||| |||| |||||| |
|
|
| T |
12244851 |
aaataatacgtcatatttcggaatgcgaaaaatacttcaaaaatatttcataaaatgaacgagtctgattctcaatcatcattgtggagaataacataat |
12244950 |
T |
|
| Q |
215 |
gat |
217 |
Q |
| |
|
||| |
|
|
| T |
12244951 |
gat |
12244953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 263 - 435
Target Start/End: Original strand, 12244955 - 12245126
Alignment:
| Q |
263 |
ccaaccctaatgttacagatcagagcacgtgattattcgactacataaataattagataatagctacggaagtatgtctccctcgccaccttctaaatgt |
362 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||| || |
|
|
| T |
12244955 |
ccaaccctagtgttacatatcagagcacatgattattcgactacataaataattagataatagttacggaagtatatctccgtcgccaccttttaaacgt |
12245054 |
T |
|
| Q |
363 |
cccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagacaccataatacacaacaacaac |
435 |
Q |
| |
|
||| |||||||||||||||| || ||||||| |||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
12245055 |
cccacaaactagagctcctcttcctgagtgtctgtacccc-agagtacagacaccataatacacaacaacaac |
12245126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 16381796 - 16381731
Alignment:
| Q |
370 |
actagagctcctcgtcttgagtgtttgtaccccaaaagtacagacaccataatacacaacaacaac |
435 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
16381796 |
actagagctcctcgtactgagtgtttgtaccccaagagtacaaacaccataatacacaacaacaac |
16381731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 435
Target Start/End: Original strand, 32945864 - 32946283
Alignment:
| Q |
15 |
atgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataat |
114 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
32945864 |
atgtaaccccctaatttccaatgttgatttaataaataatgtgaataaatttaaacaaaaaggatgttacacatactcatcaatcattcattcaaataat |
32945963 |
T |
|
| Q |
115 |
aaataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataat |
214 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| || | | |||||||||||||||||||||||||||||||| |
|
|
| T |
32945964 |
aaataatacgttatatttcagaatgcggaaaatacttcaaaaatatttcattaaatgaacgactgtgattctcaatcgtcattgtggaaaatatcataat |
32946063 |
T |
|
| Q |
215 |
gatctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataa |
314 |
Q |
| |
|
||| ||||||||||| |||| ||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32946064 |
gatttcaaatacttaaaattcccaaatttaaacattcaacgtttgaccccaactctagcgttacagatcagagcacgtgattattcgactacataaataa |
32946163 |
T |
|
| Q |
315 |
ttagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagac |
414 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||| |
|
|
| T |
32946164 |
ttagataatagctacgaaagtatatctccgtcgccaccttttaaatgtcccgc-aactagagctcctcgtcctgagtgtctgtaccccaagagtacagac |
32946262 |
T |
|
| Q |
415 |
accataatacacaacaacaac |
435 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
32946263 |
accataatacataacaacaac |
32946283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 23907211 - 23907617
Alignment:
| Q |
16 |
tgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataata |
115 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| | | |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23907211 |
tgtaacatcctaattctcaacgttgatttaataaataatgcgaataaatttaaacaataaggatattacacatactcatcaatcattcattcgaataata |
23907310 |
T |
|
| Q |
116 |
aataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatg |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
23907311 |
aataatacgttatatttcataatgcggaaaatacttcaaaaatatttcataaaatgaaggagtctgattctcaattgtcattgtggaaaatatcataa-- |
23907408 |
T |
|
| Q |
216 |
atctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataat |
315 |
Q |
| |
|
||| ||||| |||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
23907409 |
-----------ttaagattcctaaaattaaacattcagcgtttgaccccaaccccattgttacagatcagagtgcgtgattattcgactacataaacaat |
23907497 |
T |
|
| Q |
316 |
tagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagaca |
415 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || |||||||||||| ||||||||||||||||||||| || ||||||| |||||||||| |||||||||| |
|
|
| T |
23907498 |
tagataatagttacggaagtatatctccgtcaccaccttctaaacatcccgcaaactagagctcctcatcctgagtgtctgtaccccaagagtacagaca |
23907597 |
T |
|
| Q |
416 |
ccataatacacaacaacaac |
435 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
23907598 |
ccataatacacaacaacaac |
23907617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 25583746 - 25583328
Alignment:
| Q |
16 |
tgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataata |
115 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25583746 |
tgtaacaccctaattcccaacgttgatttaataaataatgcgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcactcgaataata |
25583647 |
T |
|
| Q |
116 |
aataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatg |
215 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||| ||| |||||||||||||| || ||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
25583646 |
aataatacgtcatatttcagaatgcggaaaatacttaaaacatatttcataaaataaacatgtctgatcctcaatcgtcattgtggaaaatatcataatg |
25583547 |
T |
|
| Q |
216 |
atctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataat |
315 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||||||||||||||||| || || || |||||||||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
25583546 |
at-tcaaatacttaagattcctaaaattaaacattcaatgtttgacctcatccatagtgttacagatcagagcacatgattattcgacaacataaatatt |
25583448 |
T |
|
| Q |
316 |
tagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagaca |
415 |
Q |
| |
|
|||||||||| ||| |||||| | | | ||||||||||||||| |||||||| |||||||||||||||| | ||||| |||||||||| |||||||||| |
|
|
| T |
25583447 |
tagataatagttacaaaagtatattttcgtcgccaccttctaaacgtcccgcacactagagctcctcgtccttagtgtatgtaccccaagagtacagaca |
25583348 |
T |
|
| Q |
416 |
ccataatacacaacaacaac |
435 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25583347 |
ccataatacacaacaacaac |
25583328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 92336 - 91922
Alignment:
| Q |
19 |
aacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataataaat |
118 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
92336 |
aacaccctaattcccaacgttgatttaataaataatgcgaataaatttaaacaaaaaggatgttacacatactcatcaatcattcattcgaataataaat |
92237 |
T |
|
| Q |
119 |
aatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatgatc |
218 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| ||||||||||||||||| || ||| | ||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
92236 |
aatacgtcatatttcagaatgcggaaaatacttctaaaatatttcataaaataaacatgtctgattctccatcgtcattatggaaaatatcatattgatt |
92137 |
T |
|
| Q |
219 |
tcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataattag |
318 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||| |||| |||||||||||| |||||||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
92136 |
tcaaatacttaagattcctaaaatta--cattcaacgtttaaccccaaccctagtgttacagatcagagcacatggttattcgactacataaacaattag |
92039 |
T |
|
| Q |
319 |
ataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagacacca |
418 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||| |||||||| |||||||||||||||| | ||||| |||||||||| ||||||||||||| |
|
|
| T |
92038 |
gtaatagctacgaaagtatatctccgtcgccaccttctaaacgtcccgcacactagagctcctcgtcctaagtgtatgtaccccaagagtacagacacca |
91939 |
T |
|
| Q |
419 |
taatacacaacaacaac |
435 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
91938 |
taatacataacaacaac |
91922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 13561778 - 13561364
Alignment:
| Q |
18 |
taacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataataaa |
117 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||| | ||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
13561778 |
taacatcctaattcccaacgttgatttaataaataatgtgaataaatttaaataaaaaggatgttacatatactcatcaattattcattcgaataataaa |
13561679 |
T |
|
| Q |
118 |
taatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatgat |
217 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13561678 |
taatatgtcatatttcataatgcggaaaatacttcaaaaatatttcataaaatgaag---tctctttctcaatcgtcattgtggaaaatatcataatgat |
13561582 |
T |
|
| Q |
218 |
ctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataatta |
317 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||| |||||||| |||||||||||| | ||| || ||||||||||| |||||||||| |
|
|
| T |
13561581 |
ctcaaatacttaagattcctaaaattaaacattcaacatttgacctcaaccctagtgttacagatcacaacacatgcttattcgactatgtaaataatta |
13561482 |
T |
|
| Q |
318 |
gataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagacacc |
417 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||| |||||||||| | |
|
|
| T |
13561481 |
gataatagctacggaagtatatctctttcgccaccttctaaacgtcccgcaaactaaagctcctcgtcctgagtgtatgtaccccaagagtacagacatc |
13561382 |
T |
|
| Q |
418 |
ataatacacaacaacaac |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13561381 |
ataatacacaacaacaac |
13561364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 23845768 - 23845612
Alignment:
| Q |
273 |
tgttacagatcagagcacgtgattattcgactacataaataattagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaa-c |
371 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| | |||||||||| || ||||||| || |||||||||||||| || |||||| | |
|
|
| T |
23845768 |
tgttacagatcagagcacgtatctattcgactacttaatatcccaaataatagctatggtggtatgtccccatcgccaccttctaagaatctcgcaaatc |
23845669 |
T |
|
| Q |
372 |
tagagctcctcgtcttgagtgtttgtaccccaaaagtacagacaccataatacacaa |
428 |
Q |
| |
|
|| ||||||||||||||| | ||||||||| || |||||||||||| ||||||||| |
|
|
| T |
23845668 |
taaagctcctcgtcttgaatatttgtaccctaagggtacagacaccaaaatacacaa |
23845612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 14450662 - 14450717
Alignment:
| Q |
256 |
tttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaa |
311 |
Q |
| |
|
||||||| ||||| || |||||||||||||| |||||| |||||||||||| |||| |
|
|
| T |
14450662 |
tttgacctcaaccttagtgttacagatcagatcacgtgtttattcgactacgtaaa |
14450717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 13 - 435
Target Start/End: Original strand, 20946275 - 20946699
Alignment:
| Q |
13 |
tgatgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaata |
112 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||||||| | | | ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
20946275 |
tgatgtaaaaccctaatttccaacgttgatttaataaataatgcggataaatttaaacaaaaaggatgttacacatactcatcaatcattcactcgaata |
20946374 |
T |
|
| Q |
113 |
ataaataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcata |
212 |
Q |
| |
|
||||||||||||| |||||||| ||| | ||||||||| |||||||||||||||||| || || | | ||||||||||||| || ||||||||||| |
|
|
| T |
20946375 |
ataaataatacgtcatatttcagaattcgaaaaatacttaaaaaatatttcataaaataaacatgtttgatcctcaatcgtcattctgaaaaatatcata |
20946474 |
T |
|
| Q |
213 |
atgatctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaat |
312 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
20946475 |
atgatttcaaatacttaagattcctaaaattaaacattcaacgtttgaccccatccctagtgttactgatcagagcacatgattattcaactacataaat |
20946574 |
T |
|
| Q |
313 |
aattagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagt--gtttgtaccccaaaagtac |
410 |
Q |
| |
|
| ||| ||||||| ||||||||||| | | | ||||||||||||||| |||| || |||||||||||||||| ||||| || |||||||||| ||||| |
|
|
| T |
20946575 |
atttaaataatagatacggaagtatattttcgtcgccaccttctaaacgtcctccacactagagctcctcgtcctgagtacgtctgtaccccaagagtac |
20946674 |
T |
|
| Q |
411 |
agacaccataatacacaacaacaac |
435 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
20946675 |
agacaccataatacacaacaacaac |
20946699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 43155715 - 43155667
Alignment:
| Q |
387 |
tgagtgtttgtaccccaaaagtacagacaccat-aatacacaacaacaa |
434 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| || |||||||||||| |
|
|
| T |
43155715 |
tgagtgtttgtaccccataagtacagtcaccatgaaaacacaacaacaa |
43155667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 77789 - 77370
Alignment:
| Q |
16 |
tgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataata |
115 |
Q |
| |
|
||||||||| |||||| ||| | ||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
77789 |
tgtaacaccttaattcccaacgatgatttaataaatactacgaataaatt-aaacaaaaaggatgttacatatactcatcaatcattcattccaataata |
77691 |
T |
|
| Q |
116 |
aataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatg |
215 |
Q |
| |
|
||||| || | |||||||| | || |||||||||||||||||||||||||||||| || |||| | ||||||| | |||||||||||||||||||| |
|
|
| T |
77690 |
aataacacatcatatttcagagtgcggaaaatacttcaaaaatatttcataaaataaataagtctgattctcaaccatcattgtggaaaatatcatacat |
77591 |
T |
|
| Q |
216 |
atctcaaatacttaggattc-ttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataa |
314 |
Q |
| |
|
|| ||||||| ||| | | || || |||||||||||| ||||||||||||| || |||||||||| |||||| |||||||||||||||| | | ||| |
|
|
| T |
77590 |
atttcaaataattaaaactagttgaagttaaacattcaacgtttgaccccaacattagtgttacagattagagcatgtgattattcgactacgtgagtaa |
77491 |
T |
|
| Q |
315 |
ttagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagac |
414 |
Q |
| |
|
|| | ||| ||||||||| |||| ||||| |||||||||| || |||||||||||||||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
77490 |
ttgggtaacagctacggaggtatatctccgtcgccacctttaaagggtcccgcaaactagagcttctcgtcttgagtgtatgtaccccaagagtacagac |
77391 |
T |
|
| Q |
415 |
accataatacacaacaacaac |
435 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
77390 |
accataatacacaacaacaac |
77370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 22178995 - 22178721
Alignment:
| Q |
16 |
tgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataata |
115 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
22178995 |
tgtaacaccctaattcccaacattgattgaataaataatgtgaataaatttaaacaaaaaggatgttacacatactcatcaatcattcattcgaatgata |
22178896 |
T |
|
| Q |
116 |
aataatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatg |
215 |
Q |
| |
|
|||||||| || |||||||||||| ||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||| |
|
|
| T |
22178895 |
aataatactttgtatttcataatgcggagaatacttcaaaaatatttcataaaatgaaggattatgattctcaatcgtcattgtgcaaaatatcataaaa |
22178796 |
T |
|
| Q |
216 |
atctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcac |
290 |
Q |
| |
|
|| ||||||| ||| ||||| ||||||||||||||||| |||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
22178795 |
atttcaaatatttaagattcctaaaattaaacattcaacgtttaaccccaaccctagtgttatagatcagagcac |
22178721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 290 - 434
Target Start/End: Complemental strand, 19465274 - 19465131
Alignment:
| Q |
290 |
cgtgattattcgactacataaataattagataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttga |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||| ||| |||||||||||||| || ||| |
|
|
| T |
19465274 |
cgtgattattcgactacataaataattagataatagcgacggaagtatatctccatcgccacattctaaatg-ccctacaactagagctcctcatcctga |
19465176 |
T |
|
| Q |
390 |
gtgtttgtaccccaaaagtacagacaccataatacacaacaacaa |
434 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
19465175 |
gtgtctgtaccccaagaatacagacaccataatacacaacaacaa |
19465131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 428
Target Start/End: Complemental strand, 24432391 - 24432226
Alignment:
| Q |
265 |
aaccctaatgttacagatcagagcacgtgattattcgactacataaataattagataatagctacggaagtatgtctccc-tcgccaccttctaaatgtc |
363 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| ||| | ||||||||||||| ||||||| ||| ||| |||||||||| || |
|
|
| T |
24432391 |
aaccctagtgttacagatcagagcacgtatctattcgactacttaatatcccaaataatagctacggtggtatgtcccccatcgtcaccttctaagcatc |
24432292 |
T |
|
| Q |
364 |
ccgcaaa-ctagagctcctcgtcttgagtgtttgtaccccaaaagtacagacaccataatacacaa |
428 |
Q |
| |
|
|||||| ||| ||||||||||| ||| | | |||||||||| |||||||||||| ||||||||| |
|
|
| T |
24432291 |
tcgcaaatctaaagctcctcgtcctgaatatctgtaccccaagggtacagacaccaaaatacacaa |
24432226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 31408588 - 31408303
Alignment:
| Q |
18 |
taacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataataaa |
117 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| | | ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| | |
|
|
| T |
31408588 |
taacaccctaattcccaacgttgatttaataaataatgcgaataaatttaaacaaaaaggatgttacacatacttatcaatcattcattcgaa-aataga |
31408490 |
T |
|
| Q |
118 |
taatacgttatatttcataatgtggaaaatacttcaaaaatatttcataaaatgaaggagtcagtttctcaatcgtcattgtggaaaatatcataatgat |
217 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
31408489 |
taatacgtcatatttcagaatgtggaaaatacttcaaaaatatttcct----tga----------ttctcaattgtcattgtggaaaatatcataagaat |
31408404 |
T |
|
| Q |
218 |
ctcaaatacttaggattcttaaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataatta |
317 |
Q |
| |
|
||||||||||| ||| || |||||||||||||| ||||||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
31408403 |
ttcaaatacttaaacttcctataattaaacattcaacgtttgaccccaactctagtgttacatatcagagtacgagattattcgactacataaataatta |
31408304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 317 - 434
Target Start/End: Original strand, 22554483 - 22554600
Alignment:
| Q |
317 |
agataatagctacggaagtatgtctccctcgccaccttctaaatgtcccgcaaactagagctcctcgtcttgagtgtttgtaccccaaaagtacagacac |
416 |
Q |
| |
|
||||||||||||| ||||||| | || || |||||||||||| ||||||||||||||||||| | ||||| ||||| | |||||||| ||||||||||| |
|
|
| T |
22554483 |
agataatagctacagaagtatatttctgtctccaccttctaaacgtcccgcaaactagagctcatagtcttaagtgtctctaccccaagagtacagacac |
22554582 |
T |
|
| Q |
417 |
cataatacacaacaacaa |
434 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22554583 |
cataatacacaacaacaa |
22554600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 428
Target Start/End: Original strand, 24494590 - 24494701
Alignment:
| Q |
319 |
ataatagctacggaagtatgtctccc-tcgccaccttctaaatgtcccgcaaa-ctagagctcctcgtcttgagtgtttgtaccccaaaagtacagacac |
416 |
Q |
| |
|
||||||||||| | ||||||| ||| |||||||||||||| || |||||| ||| ||||||||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
24494590 |
ataatagctacagtggtatgtcccccatcgccaccttctaagcatctcgcaaatctaaagctcctcgtcctgaatatttgtaccccaagggtacagacac |
24494689 |
T |
|
| Q |
417 |
cataatacacaa |
428 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
24494690 |
caaaatacacaa |
24494701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 19872215 - 19872276
Alignment:
| Q |
246 |
acattcaatgtttgaccccaaccctaa-tgttacagatcagagcacgtgattattcgactac |
306 |
Q |
| |
|
|||||||| |||| |||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
19872215 |
acattcaacgtttaaccccaaccccaagtgttacagatcagagcacgcatttattcgactac |
19872276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1405 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold1405
Description:
Target: scaffold1405; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 415 - 524
Alignment:
| Q |
16 |
tgtaacaccctaattctcaatgttgatttaataaatcacgtgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcattcgaataata |
115 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
415 |
tgtaacaccctaattcccaacgttgatttaataaataatgcgaataaatttaaacaaaaaggatgttatacatactcatcaatcattcactcaaataata |
514 |
T |
|
| Q |
116 |
aataatacgt |
125 |
Q |
| |
|
||| |||||| |
|
|
| T |
515 |
aattatacgt |
524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 8277890 - 8277981
Alignment:
| Q |
237 |
taaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataattagataatagcta |
328 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||| |||||||||||| | ||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
8277890 |
taaagttaaacattcaacgtttgacctcaaccctagtgttacagatcacaacacatgcttattcgactatgtaaataattagataatagcta |
8277981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 8306699 - 8306790
Alignment:
| Q |
237 |
taaaattaaacattcaatgtttgaccccaaccctaatgttacagatcagagcacgtgattattcgactacataaataattagataatagcta |
328 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||| |||||||||||| | ||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
8306699 |
taaagttaaacattcaacgtttgacctcaaccctagtgttacagatcacaacacatgcttattcgactatgtaaataattagataatagcta |
8306790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 140872 - 140811
Alignment:
| Q |
246 |
acattcaatgtttgaccccaaccctaa-tgttacagatcagagcacgtgattattcgactac |
306 |
Q |
| |
|
|||||||| |||| |||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
140872 |
acattcaacgtttaaccccaaccccaagtgttacagatcagagcacgcatttattcgactac |
140811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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