View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755-Insertion-11 (Length: 795)
Name: NF1755-Insertion-11
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 8 - 679
Target Start/End: Complemental strand, 10327196 - 10326525
Alignment:
| Q |
8 |
ttaacttttgatcacaatctgaccaggcttcacacagaacttggagatgaaagaagcctgaagtccagactttataatctcaggcacttttggacgagtt |
107 |
Q |
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| T |
10327196 |
ttaacttttgatcacaatctgaccaggcttcacacagaacttggagatgaaagaagcttgaagtccagactttataatctcaggcacttttggacgagtt |
10327097 |
T |
|
| Q |
108 |
gcttcaacaaacgtagagttagaaatctggcttgagatgtatttcctcgatttcactgcttccatactcttcatgacttcttgaaaccagcttatgagag |
207 |
Q |
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| T |
10327096 |
gcttcaacaaacgtagagttagaaatctggcttgagatgtatttcctcgatttcactgcttccatactcttcatgacttcttgaaaccagcttatgagag |
10326997 |
T |
|
| Q |
208 |
atttttcttaagttgcaatggagacagtctgaagatcaacaagagctgtctctaccagattccttagattgttccatttgtctgtgtagtttaccagatg |
307 |
Q |
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| T |
10326996 |
atttttcttaagttgcaatggagacagtctgaagatcaacaagagttgtctctaccagattccttagattgttccatttgtctgtgtagtttaccagatg |
10326897 |
T |
|
| Q |
308 |
gataacttgactccttgcttccaccagctcctcaaggttatcaaagatagtctttcacaccgcttgtaacactagattggaggttaaggttggaggtagt |
407 |
Q |
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| T |
10326896 |
gataacttgataccttgcttccaccagctcctcaaggttatcaaagacagtctttcacaccgcttgtaacactagattggaggttaaggttggaggtagt |
10326797 |
T |
|
| Q |
408 |
tgaatgttaagagaatatgaaatggaaaatgaagggatttatgatataataaccatgtcaataccagaatgagcttctgatacttccatggccacaatgt |
507 |
Q |
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| T |
10326796 |
tgaatgttcagagaatatgaaatggaaaatgaagggatttatgatataataaccatgtcaataccagaatgagcttctgatacttccatggccacaatgt |
10326697 |
T |
|
| Q |
508 |
tatcatcagaggctatggtcatttgaacaaagttttctggtagggtatcaacttctgatgcttcagacatgataacatcagaggtttcaaggttggtttc |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10326696 |
tatcatcagaggctatggtcatttgaacaaagttttctggttgggtatcaacttctgatgcttcagacatgatatcatcagaggtttcaaggttggtttc |
10326597 |
T |
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| Q |
608 |
aggtttaggaaaatgaagatgggcaactagaatgggttggtcttctaacactgatgaagatgtattaaagac |
679 |
Q |
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| T |
10326596 |
aggtttaggaaaatgaaggtgggcaactagaatgggttggtcttctaacactgatgaagatgtattaaagac |
10326525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 795
Target Start/End: Complemental strand, 10326451 - 10326414
Alignment:
| Q |
758 |
acaactaccattgttgtctcaaaggttgtttctgatgg |
795 |
Q |
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| T |
10326451 |
acaactaccattgttgtctcagaggttgtttctgatgg |
10326414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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