View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755-Insertion-12 (Length: 777)
Name: NF1755-Insertion-12
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755-Insertion-12 |
 |  |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 244 - 611
Target Start/End: Original strand, 2481464 - 2481831
Alignment:
| Q |
244 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
343 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2481464 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
2481563 |
T |
 |
| Q |
344 |
nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa |
443 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
2481564 |
aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa |
2481663 |
T |
 |
| Q |
444 |
aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg |
543 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| ||| |
|
|
| T |
2481664 |
aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt |
2481763 |
T |
 |
| Q |
544 |
tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt |
611 |
Q |
| |
|
||| | ||| ||| ||||| |||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
2481764 |
cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt |
2481831 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 2481237 - 2481332
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||| || | |||| ||||| |||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
2481237 |
ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt |
2481332 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 5365444 - 5365349
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||||| || | |||| ||||| |||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
5365444 |
ttgtagatgataaataacataatggataatattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaaaagaagatatt |
5365349 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 244 - 611
Target Start/End: Complemental strand, 12632653 - 12632286
Alignment:
| Q |
244 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
343 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12632653 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
12632554 |
T |
 |
| Q |
344 |
nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa |
443 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
12632553 |
aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa |
12632454 |
T |
 |
| Q |
444 |
aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg |
543 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| ||| |
|
|
| T |
12632453 |
aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt |
12632354 |
T |
 |
| Q |
544 |
tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt |
611 |
Q |
| |
|
||| | ||| ||| ||||| |||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
12632353 |
cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt |
12632286 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 244 - 611
Target Start/End: Complemental strand, 27108360 - 27107993
Alignment:
| Q |
244 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
343 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27108360 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
27108261 |
T |
 |
| Q |
344 |
nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa |
443 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
27108260 |
aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa |
27108161 |
T |
 |
| Q |
444 |
aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg |
543 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| ||| |
|
|
| T |
27108160 |
aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt |
27108061 |
T |
 |
| Q |
544 |
tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt |
611 |
Q |
| |
|
||| | ||| ||| ||||| |||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
27108060 |
cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt |
27107993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 12632880 - 12632785
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||||| || | |||| ||||| |||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
12632880 |
ttgtagatgataaataacataatggataatattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt |
12632785 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 27108587 - 27108492
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||| || | |||| ||||| |||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
27108587 |
ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt |
27108492 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 244 - 611
Target Start/End: Complemental strand, 44680973 - 44680606
Alignment:
| Q |
244 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
343 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44680973 |
tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt |
44680874 |
T |
 |
| Q |
344 |
nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa |
443 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
44680873 |
aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa |
44680774 |
T |
 |
| Q |
444 |
aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg |
543 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||||| ||| |
|
|
| T |
44680773 |
aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatatttccaactgagtggcgagt |
44680674 |
T |
 |
| Q |
544 |
tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt |
611 |
Q |
| |
|
||| | ||| ||| |||| |||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
44680673 |
cacatcgtttattgtcaaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt |
44680606 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 244 - 586
Target Start/End: Complemental strand, 23272215 - 23271873
Alignment:
| Q |
244 |
tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn |
343 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23272215 |
tgagacaaattgtgttccatttgtttgtcaaatttttcttagtgaagaagaagcttatgtcttttataagagatatgcttatcaacaagggttctcaatt |
23272116 |
T |
 |
| Q |
344 |
nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa |
443 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| ||| ||||||| | | ||||||||||||| |
|
|
| T |
23272115 |
aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgacaataatggaaccatcaa |
23272016 |
T |
 |
| Q |
444 |
aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg |
543 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| ||| |
|
|
| T |
23272015 |
aagagcagagaaatagacaattgtcaaagtgtaaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt |
23271916 |
T |
 |
| Q |
544 |
tacaacctttgatgttgaacataaccatggtttgctaaaccaa |
586 |
Q |
| |
|
||| | ||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
23271915 |
cacatcgtttattgtcgaacataaccatggtttgctaacccaa |
23271873 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 23272441 - 23272347
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt |
137 |
Q |
| |
|
|||||||||||||| ||||||||| || || |||||| || | |||||||||| |||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
23272441 |
ttgtagatgataaataacataatg-ataatattagtgctacaaagaccaacaataaaataagttttgatttgaatgaatatccaatagaagatatt |
23272347 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 44681200 - 44681105
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||| || | |||| ||||| |||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
44681200 |
ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt |
44681105 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 18616514 - 18616319
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatattaatt |
141 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
18616514 |
ttgtagatgataaagaacataatggattatgttagtgttatagagatcaacaataaaataagttttgatttgaatgaaagtctaa-agaagat----att |
18616420 |
T |
 |
| Q |
142 |
gctttagaaaa--tttgttcagaaataatga---------ctgagcatgatttagtgaaggacttgttagtggttgataacataggaagttctgagaaag |
230 |
Q |
| |
|
||||||||||| || || | ||| ||| | | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18616419 |
gctttagaaaagggttatttacaaacaattattcagcatttttagcatgatttagtgaaggacttgttagtagttgataacatagaaagttctgagaaag |
18616320 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 18616254 - 18616199
Alignment:
| Q |
245 |
gagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatt |
300 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
18616254 |
gagacaaattgtgttttttttgctggtcaaatttttcttaatgaaaaagaagcatt |
18616199 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 672 - 766
Target Start/End: Original strand, 31607217 - 31607311
Alignment:
| Q |
672 |
tttaatatattagtatgtaaattttgcaatttctctacccacttataccaattttttcaccacctccaaattgtgttaacattttataacagatt |
766 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31607217 |
tttaatatattactacgtaaattttgttatttctctacccacttatacccattttttcaccacctccagattgtgttaacattttataacagatt |
31607311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 672 - 758
Target Start/End: Original strand, 31617165 - 31617251
Alignment:
| Q |
672 |
tttaatatattagtatgtaaattttgcaatttctctacccacttataccaattttttcaccacctccaaattgtgttaacattttat |
758 |
Q |
| |
|
||||||||||| ||| ||||| |||| |||||| |||| || || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31617165 |
tttaatatattggtacgtaaactttgttatttctttaccaaccaatgcccattttttcaccacctccaaattgtgttaacattttat |
31617251 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 4709145 - 4709008
Alignment:
| Q |
246 |
agacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatnnn |
345 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
4709145 |
agacaaattttgtttcctttgttggtcaaatttttcttagtgaagaagaaggatatgtcttttataagagatatgcttatcagcaagaattgtcaataaa |
4709046 |
T |
 |
| Q |
346 |
nnnnggtagattcacaaacaagaatggggttatgagca |
383 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| |
|
|
| T |
4709045 |
aaaaggtagattcgtaaaaaagaatggggttattagca |
4709008 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 4708773 - 4708873
Alignment:
| Q |
241 |
taatgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctca |
340 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4708773 |
taatgagacaaattatgttctctttgttggtcgaattttttttagtgaaaaagaagcatgtct-ttttataagagatatgcttatcaacaagggttctca |
4708871 |
T |
 |
| Q |
341 |
at |
342 |
Q |
| |
|
|| |
|
|
| T |
4708872 |
at |
4708873 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 4708519 - 4708605
Alignment:
| Q |
45 |
tagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaa |
131 |
Q |
| |
|
||||||||||| ||| |||||| ||||| || || || | |||||| ||| |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4708519 |
tagatgataaataacttaatggttgatgctaatgctacatagaccatcaataaaataagttttgatttgaatgaatgtccaatagaa |
4708605 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 39789412 - 39789350
Alignment:
| Q |
279 |
ttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaa |
341 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
39789412 |
ttcttagtgaagaagaagaatttatcttttataagatatatgcatatcaacacgggttctcaa |
39789350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 14394272 - 14394311
Alignment:
| Q |
42 |
ttgtagatgataaagaacataatggatgatgttagtgtta |
81 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
14394272 |
ttgtagatgataaataacataattgatgatgttagtgtta |
14394311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 13510120 - 13510187
Alignment:
| Q |
256 |
tgttccctttgttggtcaaat--ttttcttagtgaagaagaagcatttgtcttttataagagatatgc |
321 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| | |||||| |||||||||| |||||||||||||| |
|
|
| T |
13510120 |
tgttccttttgttggtcaaatatttttcttagcaaggaagaaacatttgtcttctataagagatatgc |
13510187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University