View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1755-Insertion-14 (Length: 634)

Name: NF1755-Insertion-14
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1755-Insertion-14
NF1755-Insertion-14
[»] chr4 (5 HSPs)
chr4 (215-634)||(40011676-40012095)
chr4 (8-171)||(40012141-40012304)
chr4 (251-305)||(31053044-31053098)
chr4 (324-369)||(27763470-27763515)
chr4 (251-303)||(10355239-10355291)
[»] scaffold0245 (1 HSPs)
scaffold0245 (255-368)||(5659-5773)
[»] scaffold0229 (1 HSPs)
scaffold0229 (255-368)||(5989-6103)
[»] chr1 (5 HSPs)
chr1 (255-368)||(1279981-1280095)
chr1 (246-321)||(48252402-48252478)
chr1 (246-302)||(35120168-35120224)
chr1 (246-305)||(28016578-28016637)
chr1 (326-379)||(35120172-35120225)
[»] chr3 (3 HSPs)
chr3 (244-343)||(2973050-2973150)
chr3 (252-305)||(35970437-35970490)
chr3 (240-305)||(50888527-50888592)
[»] chr2 (4 HSPs)
chr2 (246-380)||(1465734-1465869)
chr2 (338-378)||(13292789-13292829)
chr2 (253-303)||(13056660-13056710)
chr2 (253-305)||(1465743-1465795)
[»] chr5 (2 HSPs)
chr5 (246-307)||(17358519-17358580)
chr5 (222-305)||(11649039-11649122)
[»] chr7 (3 HSPs)
chr7 (253-305)||(45429318-45429370)
chr7 (252-303)||(7465266-7465317)
chr7 (252-305)||(18358792-18358845)
[»] chr8 (1 HSPs)
chr8 (251-301)||(25487649-25487699)
[»] chr6 (2 HSPs)
chr6 (327-379)||(3245827-3245879)
chr6 (326-378)||(8514159-8514211)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 215 - 634
Target Start/End: Complemental strand, 40012095 - 40011676
Alignment:
Q  215 tcaatcaagtttaattttcgtaaactaacattgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatgatactcatgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012095 tcaatcaagtttaattttcgtaaactaacattgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatgatactcatgt 40011996  T
Q  315 tttttcaacgatattaaatgatatgacaatacgtcattggatgaatgtgtaaaataattttacaccagcaatgcatactaactaactcccaaaagaattg 414  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  40011995 tttttcaaccacattaaatgatatgacaatacgtcattggatgaatgtgtaaaataattttacaccaacaatgcattctaactaactcccaaaagaattg 40011896  T
Q  415 acagcaaatgaaaaacagaacgcaaacctatcaacaagaaacctcacaacctgaacctcacttcgcttactcgtctttttccttttcccattgttatttt 514  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011895 acagcaaatgaaaaacagaacacaaacctatcaacaagaaacctcacaacctgaacctcacttcgcttactcgtctttttccttttcccattgttatttt 40011796  T
Q  515 catcgaaccaaacctcgttaatttcaatatcatcctcaaaaacccatttcaattcatccatttttctctcacgaaacatttccttcaactcaatcaaact 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011795 catcgaaccaaacctcgttaatttcaatatcatcctcaaaaacccatttcaattcatccatttttctctcacgaaacatttccttcaactcaatcaaact 40011696  T
Q  615 ctccctcttaagtttgtctc 634  Q
    ||||||||||||||| ||||    
T  40011695 ctccctcttaagtttctctc 40011676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 40012304 - 40012141
Alignment:
Q  8 gtacacccattgaaccacagatagagcttgcttccaacaacgtttaacaccaagcatttcaataatcatcatcaactgaccctccgtgaaagacaatcca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012304 gtacacccattgaaccacagatagagcttgcttccaacaacgtttaacaccaagcatttcaataatcatcatcaactgaccctccgtgaaagacaatcca 40012205  T
Q  108 gacagcttcatcaacctcgaaaatttccaatccttagccccaatttccttatcacacaacctac 171  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40012204 gacagcttcatcaacctcgaaaatttccaatccttagccctaatttccttatcacacaacctac 40012141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 31053098 - 31053044
Alignment:
Q  251 aattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    ||||||||||||||||||  ||||||||||||  |  ||||||||||||||||||    
T  31053098 aattattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatga 31053044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 27763515 - 27763470
Alignment:
Q  324 gatattaaatgatatgacaatacgtcattggatgaatgtgtaaaat 369  Q
    ||||||||||||| |||||||||||| ||| ||| |||||||||||    
T  27763515 gatattaaatgatgtgacaatacgtcgttgaatgcatgtgtaaaat 27763470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 10355239 - 10355291
Alignment:
Q  251 aattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatat 303  Q
    |||||||||||| ||||| ||||| |||| ||  |||||||||||||||||||    
T  10355239 aattattttacatatgcattcaatcatgttttgtcatgtcaattaatgaatat 10355291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 255 - 368
Target Start/End: Original strand, 5659 - 5773
Alignment:
Q  255 attttacacatgcactcaatgatgtgtttccatgtcaattaatga-atatga-tactcatgttttttcaacgatattaaatgatatgacaatacgtcatt 352  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||  |||||  | |||||| |||| ||||  |||||||||| ||||||||| |||||    
T  5659 attttacacatgcacccaatgatgtgttgccacgtcaattaatgaggtatgacaagtcatgtgtttttaacg-cattaaatgatgtgacaatacatcatt 5757  T
Q  353 ggatgaatgtgtaaaa 368  Q
    ||||| ||||||||||    
T  5758 ggatgcatgtgtaaaa 5773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 255 - 368
Target Start/End: Original strand, 5989 - 6103
Alignment:
Q  255 attttacacatgcactcaatgatgtgtttccatgtcaattaatga-atatga-tactcatgttttttcaacgatattaaatgatatgacaatacgtcatt 352  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||  |||||  | |||||| |||| ||||  |||||||||| ||||||||| |||||    
T  5989 attttacacatgcacccaatgatgtgttgccacgtcaattaatgaggtatgacaagtcatgtgtttttaacg-cattaaatgatgtgacaatacatcatt 6087  T
Q  353 ggatgaatgtgtaaaa 368  Q
    ||||| ||||||||||    
T  6088 ggatgcatgtgtaaaa 6103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 255 - 368
Target Start/End: Original strand, 1279981 - 1280095
Alignment:
Q  255 attttacacatgcactcaatgatgtgtttccatgtcaattaatga-atatga-tactcatgttttttcaacgatattaaatgatatgacaatacgtcatt 352  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||  |||||  | |||||| |||| ||||  |||||||||| ||||||||| |||||    
T  1279981 attttacacatgcacccaatgatgtgttgccacgtcaattaatgaggtatgacaagtcatgtgtttttaacg-cattaaatgatgtgacaatacatcatt 1280079  T
Q  353 ggatgaatgtgtaaaa 368  Q
    ||||| ||||||||||    
T  1280080 ggatgcatgtgtaaaa 1280095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 48252402 - 48252478
Alignment:
Q  246 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatgat-actcatgttttttca 321  Q
    |||| ||| ||||||||||| || |||||||||||||||||  ||||||||| |||||||| |||||||| ||||||    
T  48252402 tgtacaataattttacacatacattcaatgatgtgtttccacatcaattaataaatatgataactcatgtattttca 48252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 35120224 - 35120168
Alignment:
Q  246 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaata 302  Q
    |||||| ||||||||||||||||  ||||||||| || |||||||||||||| ||||    
T  35120224 tgtaaagttattttacacatgcatccaatgatgtattgccatgtcaattaataaata 35120168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 28016578 - 28016637
Alignment:
Q  246 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    |||| ||||||||||||||| || |||||||||||||  ||| |||||||| ||||||||    
T  28016578 tgtacaattattttacacatacattcaatgatgtgttgtcatttcaattaacgaatatga 28016637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 35120172 - 35120225
Alignment:
Q  326 tattaaatgatatgacaatacgtcattggatgaatgtgtaaaataattttacac 379  Q
    |||||| ||| ||| |||||| |||||||||| ||||||||||||| |||||||    
T  35120172 tattaattgacatggcaatacatcattggatgcatgtgtaaaataactttacac 35120225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 2973050 - 2973150
Alignment:
Q  244 attgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga-tactcatgttttttcaacgatattaaatgatatgaca 342  Q
    |||||||||||||||||||  |||| | ||| || ||||| || |||||| |||||||||||  | |||||| |||||||| |||||||||||| |||||    
T  2973050 attgtaaaattattttacatttgcatttaataatatgttttcacgtcaatcaatgaatatgacaaatcatgtattttcaaccatattaaatgatgtgaca 2973149  T
Q  343 a 343  Q
    |    
T  2973150 a 2973150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 35970437 - 35970490
Alignment:
Q  252 attattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    ||||||||||||||||| ||||| |||||||  || ||||||||||||||||||    
T  35970437 attattttacacatgcattcaatcatgtgttgtcacgtcaattaatgaatatga 35970490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 50888527 - 50888592
Alignment:
Q  240 taacattgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    ||||| ||||||||||||||||||||| |   |||||||| || | | ||||||||||||||||||    
T  50888527 taacaatgtaaaattattttacacatgtatcaaatgatgtcttacaacgtcaattaatgaatatga 50888592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 1465869 - 1465734
Alignment:
Q  246 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga-tactcatgttttttcaacgatattaaatgatatgacaat 344  Q
    |||| ||||||||||||||||||  ||||||||||||||||  ||| || || |||||||  |||| ||| ||||||    |||||| |||  ||||||     
T  1465869 tgtacaattattttacacatgcatccaatgatgtgtttccacatcatttgatcaatatgacaactcgtgtgttttcatatttattaattgacgtgacaac 1465770  T
Q  345 acgtcattggatgaatgtgtaaaataattttacacc 380  Q
    || |||||||||| ||||||||||||| | ||||||    
T  1465769 acatcattggatgcatgtgtaaaataactgtacacc 1465734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 13292829 - 13292789
Alignment:
Q  338 tgacaatacgtcattggatgaatgtgtaaaataattttaca 378  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  13292829 tgacaatacatcattgaatgaatgtgtaaaataattttaca 13292789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 13056710 - 13056660
Alignment:
Q  253 ttattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatat 303  Q
    |||||||||||||||| ||||||||||||| |||  ||||| |||||||||    
T  13056710 ttattttacacatgcattcaatgatgtgttgccacatcaatgaatgaatat 13056660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 1465743 - 1465795
Alignment:
Q  253 ttattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    ||||||||||||||||  ||||||||||||  || |||||||||| |||||||    
T  1465743 ttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatga 1465795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 17358519 - 17358580
Alignment:
Q  246 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatgata 307  Q
    |||||| ||||||||||||||||  | ||||||||| | |||||||||||||||| ||||||    
T  17358519 tgtaaagttattttacacatgcatactatgatgtgtcttcatgtcaattaatgaagatgata 17358580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 11649039 - 11649122
Alignment:
Q  222 agtttaattttcgtaaactaacattgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    |||||||||||  || || |||  |||||| |||||||| |||||||  ||||||||||||  ||| |||||||||||||||||    
T  11649039 agtttaatttttatacaccaactatgtaaagttattttatacatgcatacaatgatgtgttgacatctcaattaatgaatatga 11649122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 45429370 - 45429318
Alignment:
Q  253 ttattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    ||||||||||||||||   |||||| |||| ||||||||||||||||||||||    
T  45429370 ttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaatatga 45429318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 7465266 - 7465317
Alignment:
Q  252 attattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatat 303  Q
    ||||||||||||||| | ||||| ||||||||  ||||||||||||||||||    
T  7465266 attattttacacatggattcaattatgtgtttttatgtcaattaatgaatat 7465317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 18358792 - 18358845
Alignment:
Q  252 attattttacacatgcactcaatgatgtgtttccatgtcaattaatgaatatga 305  Q
    |||||||| ||||||||   |||||||||||  |||||||||||||||||||||    
T  18358792 attattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatga 18358845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 25487699 - 25487649
Alignment:
Q  251 aattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 301  Q
    |||||||||||||||  | ||||||||||||| ||| ||||||||||||||    
T  25487699 aattattttacacatatattcaatgatgtgttgccacgtcaattaatgaat 25487649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 3245827 - 3245879
Alignment:
Q  327 attaaatgatatgacaatacgtcattggatgaatgtgtaaaataattttacac 379  Q
    ||||| ||||||||||||||||||||| ||  ||| ||||||||| |||||||    
T  3245827 attaattgatatgacaatacgtcattgaatatatgagtaaaataagtttacac 3245879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 8514159 - 8514211
Alignment:
Q  326 tattaaatgatatgacaatacgtcattggatgaatgtgtaaaataattttaca 378  Q
    |||||| |||| ||||||||| |||||| ||| ||||||||||||||| ||||    
T  8514159 tattaattgatgtgacaatacatcattgcatgtatgtgtaaaataattataca 8514211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University