View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755-Insertion-17 (Length: 682)
Name: NF1755-Insertion-17
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755-Insertion-17 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 15018696 - 15018388
Alignment:
| Q |
8 |
gtatctcggtttgaaacaaaaatgaacctaacctatgcaaattgcgtgtatctaatttgacatgaatcacagcatggatctcaattctttctgtccgatc |
107 |
Q |
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| T |
15018696 |
gtatctcggtttgaaacaaaaatgaacctaacctatgcaaattgcgcgtatctaatttgatatgaatcacagcatggatctcaattctttctgtccgatt |
15018597 |
T |
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| Q |
108 |
gttgagccgcaacatgaaccttactttattctgatgaatctcgatttattattatagattatgattttttaggggttgaacacttgagctttgtgtagcc |
207 |
Q |
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| T |
15018596 |
gttgagccgtaacatgaaccttactttattctgatgaatctcgatttattattatagattatgattttttaggggttgaacacttgagctttgtgtagcc |
15018497 |
T |
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| Q |
208 |
agtcacttttgtcattttgattgatgacttgaatcgtgaattattttgaagtttggatacgattatcaacttttgtcctttcttattcttaacgaaatta |
307 |
Q |
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| T |
15018496 |
agtcactgttgtcattttgattgatgacttgaatcgtgaattattttgaagtttggatacgattatcaacttttgtcctttcttattcttaacgaaatta |
15018397 |
T |
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| Q |
308 |
attctatca |
316 |
Q |
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||||||||| |
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| T |
15018396 |
attctatca |
15018388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 15025814 - 15025506
Alignment:
| Q |
8 |
gtatctcggtttgaaacaaaaatgaacctaacctatgcaaattgcgtgtatctaatttgacatgaatcacagcatggatctcaattctttctgtccgatc |
107 |
Q |
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| T |
15025814 |
gtatctcggtttgaaacaaaaatgaacctaacctatgcaaattgcgcgtatctaatttgatatgaatcacagcatggatctcaattctttctgtccgatt |
15025715 |
T |
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| Q |
108 |
gttgagccgcaacatgaaccttactttattctgatgaatctcgatttattattatagattatgattttttaggggttgaacacttgagctttgtgtagcc |
207 |
Q |
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| T |
15025714 |
gttgagccgtaacatgaaccttactttattctgatgaatctcgatttattattatagattatgattttttaggggttgaacacttgagctttgtgtagcc |
15025615 |
T |
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| Q |
208 |
agtcacttttgtcattttgattgatgacttgaatcgtgaattattttgaagtttggatacgattatcaacttttgtcctttcttattcttaacgaaatta |
307 |
Q |
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| T |
15025614 |
agtcactgttgtcattttgattgatgacttgaatcgtgaattattttgaagtttggatacgattatcaacttttgtcctttcttattcttaacgaaatta |
15025515 |
T |
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| Q |
308 |
attctatca |
316 |
Q |
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| T |
15025514 |
attctatca |
15025506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 15043940 - 15043669
Alignment:
| Q |
8 |
gtatctcggtttgaaacaaaaatgaacctaacctatgcaaattgcgtgtatctaatttgacatgaatcacagcatggatctcaattctttctgtccgatc |
107 |
Q |
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| T |
15043940 |
gtatctcggtttgaaacaaaa-tgaacctaacctatgaaaattgcttgtatctaatttgacatgaatcacagcgtggatctcaattctttctgtccgatt |
15043842 |
T |
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| Q |
108 |
gttgagccgcaacatgaaccttactttattctgatgaatctcgatttattattatagattatgattttttaggggttgaacacttgagctttgtgtagcc |
207 |
Q |
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| T |
15043841 |
tttgagccgcaacatgaaccttaatttattctgatgaatctcgatttattattatagattatgattttttaggggttgaacacttgagctttgtgtagcc |
15043742 |
T |
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| Q |
208 |
agtcacttttgtcattttgattgatgacttgaatcgtgaattattttgaagtttggatacgat-tatcaactt |
279 |
Q |
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| T |
15043741 |
agtcacttttgtcattttgattgatgacttgaatcgtgaattattttgaagtttggatacgatatatcaactt |
15043669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 141 - 272
Target Start/End: Complemental strand, 15004060 - 15003929
Alignment:
| Q |
141 |
atgaatctcgatttattattatagattatgattttttaggggttgaacacttgagctttgtgtagccagtcacttttgtcattttgattgatgacttgaa |
240 |
Q |
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| T |
15004060 |
atgaatctcaatttattattacagattatgattttttaggggttgaacacttgagcgcagtgtagccggtcactgttgtcattttgattgatgacttgaa |
15003961 |
T |
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| Q |
241 |
tcgtgaattattttgaagtttggatacgatta |
272 |
Q |
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| T |
15003960 |
tcgtgaattattttgaagtttggatacgatta |
15003929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 15004127 - 15004080
Alignment:
| Q |
54 |
tgtatctaatttgacatgaatcacagcatggatctcaattctttctgt |
101 |
Q |
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| T |
15004127 |
tgtatctaatttgacatgaatagcagcatggatctcaattctttctgt |
15004080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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