View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755-Insertion-18 (Length: 588)
Name: NF1755-Insertion-18
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755-Insertion-18 |
 | |
|
| [»] chr1 (9 HSPs) |
| |
|
| [»] scaffold0394 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Complemental strand, 49688232 - 49687650
Alignment:
| Q |
7 |
actgtagacatctgatttatgggacaccccaccaaaattttgggagaacaactctggagcaatatcctggcgttccccttgcaccaaatatggatacaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49688232 |
actgtagacatctgatttatgggacaccccaccaaaatttcgggagaacaactctggagcaatatcctggcgttccccttgcaccaaatatggatacaat |
49688133 |
T |
|
| Q |
107 |
gctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49688132 |
gctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgaggttttatgtcaaaatgt |
49688033 |
T |
|
| Q |
207 |
aagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgcc-aactgcaatattatacaatgttttgcaatccaattggcgatcatct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49688032 |
aagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgcccaactgcaatattatacaatgttttgcaatccaattgccgatcatcc |
49687933 |
T |
|
| Q |
306 |
ttcaatggatttttctcttcgtatatgaacttctcaagagatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaacccca |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49687932 |
ttcaatggatttttctcttcgtatatgaacttctcaagatatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaacccca |
49687833 |
T |
|
| Q |
406 |
aaagcctaacaacattaatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccatcaccttttgattcacttaaaaccttcactgc |
505 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49687832 |
aaagcctaacaacattgatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccgtcaccttttgattcacttaaaaccttcactgc |
49687733 |
T |
|
| Q |
506 |
aataactcactcatctggtaacttcccttggtatacacttccgaagcctccttggcctaatatgtttctaaaagagtgtgtta |
588 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49687732 |
aataacacactcatctggtaacttcccttggtatacacttccgaagcctccttggcctaatatgtttctaaaagagtgtgtta |
49687650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 582
Target Start/End: Complemental strand, 49710938 - 49710360
Alignment:
| Q |
7 |
actgtagacatctgatttatgggacaccccaccaaaattttgggagaacaactctggagcaatat--cctggcgttccccttgcaccaaatatggataca |
104 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
49710938 |
actgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcaccaaatattgataca |
49710839 |
T |
|
| Q |
105 |
atgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcc-tcatcaagtaatatattatgaggttttatgtcaaaa |
203 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||| || |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49710838 |
atgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatgtcaaaa |
49710739 |
T |
|
| Q |
204 |
tgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgccaactgcaatattatacaatgttttgcaatccaattggcgatcat |
303 |
Q |
| |
|
|| ||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
49710738 |
tgcaagattctagtgttgcagcctctgtgcaagtactctagtccacgagcaaccccaactgcaatatcatacaatgttttgcaatccaactggcgatcat |
49710639 |
T |
|
| Q |
304 |
ctttcaatggatttttctcttcgtatatgaacttctcaagagatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaaccc |
403 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49710638 |
ccttcaatggatttttctcttcgtatatgaacttctcaagagatccattaggcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccc |
49710539 |
T |
|
| Q |
404 |
caaaagcctaacaacattaatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccatcaccttttgattcacttaaaaccttcact |
503 |
Q |
| |
|
|||||| |||||||| || | ||| ||||||||||| |||||||||||||||||||| |||||||| || || ||||||| |||||||||||| |||||| |
|
|
| T |
49710538 |
caaaagtctaacaacgttgacatgcgaagttctactaatactcgcaacttcattaataaaatcttcgccgtcgccttttggttcacttaaaactttcact |
49710439 |
T |
|
| Q |
504 |
gcaataactcactcatctggtaacttcccttggtatacacttccgaagcctccttggcctaatatgtttctaaaagagt |
582 |
Q |
| |
|
|||| || | |||||| ||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||||| |
|
|
| T |
49710438 |
gcaacaatacgctcatcatttaacttccctttgtatacacttccgtaccctccttgtcctaatttgtttctaaaagagt |
49710360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Complemental strand, 49683328 - 49682748
Alignment:
| Q |
7 |
actgtagacatctgatttatgggacaccccaccaaaattttgggagaacaactctggagcaatat--cctggcgttccccttgcaccaaatatggataca |
104 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| | ||||||| |||||||||||||| ||||| || ||||||||||||||||| |||||| |
|
|
| T |
49683328 |
actgtagacatctgatttgtgtgacaccccaccaaaatgtctagagaacagctctggagcaatatatcctggtgtcccccttgcaccaaatattgataca |
49683229 |
T |
|
| Q |
105 |
atgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaat |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||| ||||||| || ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
49683228 |
atgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggttttatgtcaaaat |
49683129 |
T |
|
| Q |
205 |
gtaagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgccaactgcaatattatacaatgttttgcaatccaattggcgatcatc |
304 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||||| ||||||||||||||||| ||||||| |||||| ||||||| |||||||||| |||||| |
|
|
| T |
49683128 |
gtaagattctagtgttgcagcctctgtgcatgtactctaacccacgagcaacgccaacagcaatatcatacaacattttgcattccaattggccatcatc |
49683029 |
T |
|
| Q |
305 |
tttcaatggatttttctcttcgtatatgaacttctcaagagatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaacccc |
404 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49683028 |
cttcaatggatttttctc---gtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaacccc |
49682932 |
T |
|
| Q |
405 |
aaaagcctaacaacattaatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccatcaccttttgattcacttaaaaccttcactg |
504 |
Q |
| |
|
||||| |||| ||| || | ||| ||||||||| |||||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| | |
|
|
| T |
49682931 |
aaaagtctaagaacgttgacatgcgaagttctattgatactcgcaacttcattaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacag |
49682832 |
T |
|
| Q |
505 |
caataactcactcatctggtaacttcccttggtatacacttccgaagcctccttggcctaatatgtttctaaaagagtgtgtta |
588 |
Q |
| |
|
||| ||| | |||||| ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
49682831 |
caacaacacgctcatcacgtaacctccctttgtatacacttccgaaccctccttggcctaatttgtttctaaaagagtttgtta |
49682748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 507
Target Start/End: Complemental strand, 49714571 - 49714077
Alignment:
| Q |
14 |
acatctgatttatgggacaccccaccaaaattttgggagaacaactctggagcaatat--cctggcgttccccttgcaccaaatatggatacaatgcttt |
111 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
49714571 |
acatctgatttatgtgacaccccgtcaaaatttctggagaacaactctggagcaatatatcctggtgttccccc-gcaacaaatatggatacaatgcttt |
49714473 |
T |
|
| Q |
112 |
cttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagat |
211 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||| ||| |||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49714472 |
cttttcttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgaggtttaatgtcaaaatgtaagat |
49714373 |
T |
|
| Q |
212 |
tctagtgttgcagcctctacgaaaatactctagtccacgagcaacgccaactgcaatattatacaatgttttgcaatccaattggcgatcatctttcaat |
311 |
Q |
| |
|
||||||||| |||||||| | || ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||| | ||| |
|
|
| T |
49714372 |
tctagtgttacagcctctgtgcaagtactctaacccacgagcaacaccaactgcaatatcatacaatgttttgcaatccaattggtgatcgtctgttaat |
49714273 |
T |
|
| Q |
312 |
ggatttttctcttcgtatatgaacttctcaagagatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaaaagcc |
411 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49714272 |
ggattcttttcttcatatattaacttttcaagggatccattaggcatgaattcatatattagtgcctttttagaaccatccaaacagaaccccaaaagtc |
49714173 |
T |
|
| Q |
412 |
taacaacattaatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccatcaccttttgattcacttaaaaccttcactgcaa |
507 |
Q |
| |
|
||||||| || | ||| |||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||| ||||||||||||| |||| |
|
|
| T |
49714172 |
taacaacgttgacatgcgaagttctactgatactcgcaacttcgttgatgaaatcttcactgtcacctttggattcatttaaaaccttcaccgcaa |
49714077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 290 - 578
Target Start/End: Complemental strand, 49215347 - 49215059
Alignment:
| Q |
290 |
caattggcgatcatctttcaatggatttttctcttcgtatatgaacttctcaagagatccattagacatgaattcgtatattagtgcctttttagaacca |
389 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| | |
|
|
| T |
49215347 |
caattggcgatcatccctcaatggatttttctcttcatatatgaacttctcaagagatccattaggcatgaattcatatattaatgcctttttagaatta |
49215248 |
T |
|
| Q |
390 |
tccaaacagaaccccaaaagcctaacaacattaatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccatcaccttttgattcac |
489 |
Q |
| |
|
|||||||||||||||||||| |||||||| || | ||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
49215247 |
tccaaacagaaccccaaaagtctaacaacgttgacatgtgaagttctactaatactcgcaacttcattaataaaatcttcgccatcgccttttgattcac |
49215148 |
T |
|
| Q |
490 |
ttaaaaccttcactgcaataactcactcatctggtaacttcccttggtatacacttccgaagcctccttggcctaatatgtttctaaaa |
578 |
Q |
| |
|
||||||| |||||||||| | | |||||| |||||||||||| |||||||| |||| | ||||| || |||||| ||||||||||| |
|
|
| T |
49215147 |
ttaaaactttcactgcaactatacgctcatcatgtaacttccctttgtatacacctccgtaccctccctgacctaatttgtttctaaaa |
49215059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 49215593 - 49215347
Alignment:
| Q |
14 |
acatctgatttatgggacaccccaccaaaattttgggagaacaactctggagcaatat--cctggcgttccccttgcaccaaatatggatacaatgcttt |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||| |||| |||| |
|
|
| T |
49215593 |
acatctgatttatgtgacaccccaccaaaatgtctggagaacaactctggagcaatatatcctggcgttcctcttgcgccaaatacggatgcaatacttt |
49215494 |
T |
|
| Q |
112 |
cttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagat |
211 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| ||| |||| || || ||||| ||| | |||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
49215493 |
cttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaatgcaagat |
49215394 |
T |
|
| Q |
212 |
tctagtgttgcagcctctacgaaaatactctagtccacgagcaacgc |
258 |
Q |
| |
|
||||||||| |||||||| | || ||||||| |||||||||||||| |
|
|
| T |
49215393 |
tctagtgttacagcctctgtgcaagtactctaatccacgagcaacgc |
49215347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 49728769 - 49728422
Alignment:
| Q |
14 |
acatctgatttatgggacaccccaccaaaattttgggagaacaactctggagcaat--atcctggcgttccccttgcaccaaatatggatacaatgcttt |
111 |
Q |
| |
|
||||| ||||| || || || |||||||||||| ||||||| ||||||||||| |||||| || || || ||||| |||| ||||| || |||| |
|
|
| T |
49728769 |
acatcagatttgtgagagacgccaccaaaatttctagagaacacttctggagcaatgtatcctgcagtacctctagcacctaataaggatatgatacttt |
49728670 |
T |
|
| Q |
112 |
cttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagat |
211 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||| ||| || || || ||||| || || || |||||||||||||||||||| ||||||||||| || |
|
|
| T |
49728669 |
cttttcttggacatacttttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaatgtaaaat |
49728570 |
T |
|
| Q |
212 |
tctagtgttgcagcctctacgaaaatactctagtccacgagcaacgccaactgcaatattatacaatgttttgcaatccaattggcgatcatctttcaat |
311 |
Q |
| |
|
| |||| ||||| ||| | | | |||||||| ||| ||||||||||||| ||||||||| || | ||||||||| |||||| ||| |||||| |
|
|
| T |
49728569 |
tttagtattgcaacctttgtgcagatactctaatccccgagcaacgccaattgcaatattgtagacagttttgcaactcaattgaagattgagcttcaat |
49728470 |
T |
|
| Q |
312 |
ggatttttctcttcgtatatgaacttctcaagagatccattagacatg |
359 |
Q |
| |
|
|||| ||| | ||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
49728469 |
ggatctttgttttcatatatgaacttctcaagtgatccattaggcatg |
49728422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 72 - 301
Target Start/End: Complemental strand, 49725287 - 49725058
Alignment:
| Q |
72 |
cctggcgttccccttgcaccaaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcat |
171 |
Q |
| |
|
|||| |||||| || ||||||||||| ||||| || ||||||||||| || ||||| |||||||||||||| ||| || | ||| ||||| ||||| |
|
|
| T |
49725287 |
cctgccgttcctctcgcaccaaatattgataccatactttcttttcttgtgcaaatttttgcaagtccaaaatccgaaattctggggttgaaattctcat |
49725188 |
T |
|
| Q |
172 |
caagtaatatattatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgccaactgcaatatt |
271 |
Q |
| |
|
| | | || ||||||||||||||||||||||| || |||||||| ||||||||| | | | || ||||| || ||||| || |||| ||| |||| |
|
|
| T |
49725187 |
ccaaaagaatgttatgaggttttatgtcaaaatgcaaaattctagtattgcagcctttgtgcaggtattctagccctcgagctacaccaattgcgatata |
49725088 |
T |
|
| Q |
272 |
atacaatgttttgcaatccaattggcgatc |
301 |
Q |
| |
|
||||| |||| ||||||||||||| |||| |
|
|
| T |
49725087 |
gtacaacgtttggcaatccaattggagatc |
49725058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 11033343 - 11033420
Alignment:
| Q |
130 |
tagcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgta |
207 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||| ||||||||| | || |||||||| ||||||||||| |||| |
|
|
| T |
11033343 |
tagctagtccaaaatcagaaacttttgggttgaaattctcatcaagaaggatgttatgaggctttatgtcaaagtgta |
11033420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 505
Target Start/End: Complemental strand, 30986180 - 30986001
Alignment:
| Q |
326 |
gtatatgaacttctcaagagatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaaaagcctaacaacattaata |
425 |
Q |
| |
|
|||||| || || ||||| || ||||||||||| ||||| ||||| || || || ||| |||| || ||||| || || | ||| |||||||||||| | |
|
|
| T |
30986180 |
gtatataaatttgtcaagggaaccattagacataaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacattaaca |
30986081 |
T |
|
| Q |
426 |
tgagaagttctactgatactcgcaacttcattaatgaaatcttcaccatcaccttttgattcacttaaaaccttcactgc |
505 |
Q |
| |
|
|| || |||||| | ||||| ||||| |||||||| || |||||||||| ||||||||| || |||| | ||||||||| |
|
|
| T |
30986080 |
tgtgaggttctagtaatactagcaacctcattaataaagtcttcaccatttccttttgatgcatttaatatcttcactgc |
30986001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 505
Target Start/End: Complemental strand, 30992344 - 30992165
Alignment:
| Q |
326 |
gtatatgaacttctcaagagatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaaaagcctaacaacattaata |
425 |
Q |
| |
|
|||||| || || ||||| || ||||||||||| ||||| ||||| || || || ||| |||| || ||||| || || | ||| |||||||||||| | |
|
|
| T |
30992344 |
gtatataaatttgtcaagggaaccattagacataaattcatatatgagagctttattacaaccttcaaaacaaaatccaagaaggttaacaacattaaca |
30992245 |
T |
|
| Q |
426 |
tgagaagttctactgatactcgcaacttcattaatgaaatcttcaccatcaccttttgattcacttaaaaccttcactgc |
505 |
Q |
| |
|
|| || |||||| | ||||| ||||| |||||||| || |||||||||| ||||||||| || |||| | ||||||||| |
|
|
| T |
30992244 |
tgtgaggttctagtaatactagcaacctcattaataaagtcttcaccatttccttttgatgcatttaatatcttcactgc |
30992165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 31224585 - 31224434
Alignment:
| Q |
102 |
acaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaa |
201 |
Q |
| |
|
|||||||||||||| || ||||||| ||| |||||||||||||| ||| | || || || |||| ||||| | | || || || ||||||||||||| |
|
|
| T |
31224585 |
acaatgctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaa |
31224486 |
T |
|
| Q |
202 |
aatgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagc |
253 |
Q |
| |
|
||||||| ||||||||| | || |||| | | || ||||||||||||||||| |
|
|
| T |
31224485 |
aatgtaaaattctagtggtacatcctccatgcaagtactctagtccacgagc |
31224434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 31201401 - 31201522
Alignment:
| Q |
132 |
gcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctac |
231 |
Q |
| |
|
|||||||||||||| ||| | ||||| || |||| |||||| | | |||||||| ||||||||||| |||||||| |||| |||| | || |||||| |
|
|
| T |
31201401 |
gcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatgtaaaattcgagtggtacatcctctat |
31201500 |
T |
|
| Q |
232 |
gaaaatactctagtccacgagc |
253 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
31201501 |
gcaagtactctagtccacgagc |
31201522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 31189594 - 31189712
Alignment:
| Q |
132 |
gcaagtccaaaatcagaattttttgggcagaaatcctcatcaagtaatatattatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctac |
231 |
Q |
| |
|
|||||||||||||| ||| ||||||| || |||| |||||| | | || ||||| ||||||||||| |||||||| ||||| ||| | || |||||| |
|
|
| T |
31189594 |
gcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaattcttgtggtacatcctctat |
31189693 |
T |
|
| Q |
232 |
gaaaatactctagtccacg |
250 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
31189694 |
gcaagtactctagtccacg |
31189712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 31145587 - 31145657
Alignment:
| Q |
183 |
ttatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagc |
253 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||| | || |||||| | || |||||||| |||||||| |
|
|
| T |
31145587 |
ttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctagcccacgagc |
31145657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 31171900 - 31171970
Alignment:
| Q |
183 |
ttatgaggttttatgtcaaaatgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagc |
253 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||| | || |||||| | || |||||||| |||||||| |
|
|
| T |
31171900 |
ttatgtggttttatgtcaaaatgtaaaattcgagtggtacatcctctatgcaagtactctagcccacgagc |
31171970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 33305247 - 33305159
Alignment:
| Q |
78 |
gttccccttgcaccaaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaatc |
166 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||| || || || ||||||||| ||| ||||||||||| || |||||||||| ||||| |
|
|
| T |
33305247 |
gttcctcttgtaccaagtatggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatc |
33305159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 31608433 - 31608469
Alignment:
| Q |
121 |
gacatattttagcaagtccaaaatcagaattttttgg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31608433 |
gacatattttagcaagtccaaaatcagatatttttgg |
31608469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 2115 - 2166
Alignment:
| Q |
121 |
gacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatc |
172 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
2115 |
gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcatc |
2166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 15063419 - 15063368
Alignment:
| Q |
121 |
gacatattttagcaagtccaaaatcagaattttttgggcagaaatcctcatc |
172 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
15063419 |
gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcatc |
15063368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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