View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755-Insertion-19 (Length: 503)
Name: NF1755-Insertion-19
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755-Insertion-19 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Complemental strand, 38645420 - 38644925
Alignment:
| Q |
8 |
cagaagatctcttatctccaaacacaatcctagatgaaatattgtttgatcaagaccaatcgcaatatcacttatatccaaatacaatcctagacgaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645420 |
cagaagatctcttatctccaaacacaatcctagatgaaatattgtttgatcaagaccaatcgcaatatcacttatatccaaatacaatcctagacgaaat |
38645321 |
T |
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| Q |
108 |
cttcgatcaagaagagtccatgcaaggattgttgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctaaagaatgaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38645320 |
cttcgatcaagaagagtccatgcaaggattgttgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctagagaatgaa |
38645221 |
T |
|
| Q |
208 |
ttgtgtggtggagttaccgaagaaggccgcaaaaatgtgtttgtttcgagggaagaagaatcttattggaatgcagttcaagaagagctaatggaagaga |
307 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645220 |
ttgtgtggtggagttaccgaaaaaggccgcaaaaatgtgtttgtttcgagggaagaagaatcttattggaatgcagttcaagaagagctaatggaagaga |
38645121 |
T |
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| Q |
308 |
caagtttagttgatcttttgctgatgggagctgaagtcgttgaatcacagaatatgactctttagctaaccattttgtttcaagctgcatagttgagttg |
407 |
Q |
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| T |
38645120 |
catgtttagttgatcttttgctgatgggagctgaagtcgttgaatcacagaatatgactctttagctaaccattttgtttcaagctgcatagttgagttg |
38645021 |
T |
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| Q |
408 |
cagccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaatatctaatgaatcttcata |
503 |
Q |
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| T |
38645020 |
cagccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaatatctaatgaatcttcata |
38644925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 38899084 - 38899445
Alignment:
| Q |
8 |
cagaagatctcttatctccaaacacaatcctagatgaaatattgtttgatcaagaccaatcgcaatatcacttatatccaaatacaatcctagacgaaat |
107 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||| |
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| T |
38899084 |
cagaagatctcttatttccaaatacaatcctagatgaaatattgtttgatcaagaccaatcacaatatctctcatctccaaatacaatcctagacgaaat |
38899183 |
T |
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| Q |
108 |
cttcgatcaagaagagtccatgcaaggattgttgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctaaagaatgaa |
207 |
Q |
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| T |
38899184 |
cttcgatcaagaagagtccatgcaaggattgctgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctagagtatgaa |
38899283 |
T |
|
| Q |
208 |
ttgtgtggtggagttaccgaagaaggccgcaaaaatgtgtttgtttcgagggaagaagaatcttattggaatgcagttcaagaagagctaatggaagaga |
307 |
Q |
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||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| |||||||||||| |
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| T |
38899284 |
ttgtgtggtggagttacagaaaaaggccgcgaaaatgtgtttgtttcgagggaaaaagattcttattggaaggaagttcaagaagagttaatggaagaga |
38899383 |
T |
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| Q |
308 |
caagtttagttgatcttttgctgatgggagctgaagtcgttgaatcacagaatatgactctt |
369 |
Q |
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| T |
38899384 |
caagtttagttgatcttttgctgataggagctgaagctgctgaatcacaaaacatgactctt |
38899445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 366 - 503
Target Start/End: Original strand, 38656935 - 38657077
Alignment:
| Q |
366 |
tctttagctaaccattttgtttcaagctgcatagttgagt-----tgcagccatttcaaccaattcatactcagggatcatggtcatacttttagacttc |
460 |
Q |
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||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||| |
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| T |
38656935 |
tctttggctaaccactttgtttcaaactgcatagttgagccatactgcagccatttcaaccaattc-tactcagagatcatgatcatacttctagacttc |
38657033 |
T |
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| Q |
461 |
atcaatctaaatcaactgatgtaat-atctaatgaatcttcata |
503 |
Q |
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| T |
38657034 |
atcaatctaaatctactgatataataatctaatgattcatcata |
38657077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 485
Target Start/End: Complemental strand, 16805923 - 16805848
Alignment:
| Q |
410 |
gccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat |
485 |
Q |
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| T |
16805923 |
gccatttcaactaatgcatactaaggaatcattgtaatacatctagccttcatcaatctaaatcaactaatgtaat |
16805848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 503
Target Start/End: Complemental strand, 23955980 - 23955880
Alignment:
| Q |
404 |
gttgcagccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat-atctaatgaatcttcat |
502 |
Q |
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||||||||||||| ||||||||||| ||||| ||||| || |||| | ||| ||| ||||| ||||||| | ||||||| | ||||||||| || |||| |
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| T |
23955980 |
gttgcagccatttaaaccaattcatgttcaggaatcattgtgatacatctagccttaatcaacctaaatctattgatgtagtcatctaatgattcgtcat |
23955881 |
T |
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| Q |
503 |
a |
503 |
Q |
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| T |
23955880 |
a |
23955880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 22769149 - 22769076
Alignment:
| Q |
422 |
aattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat-atctaatga |
494 |
Q |
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|||||||||||||| ||||| ||| | | ||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
22769149 |
aattcatactcaggaatcattgtcgttgatctagccttcatcaatctaaatctactgatgtaatcatctaatga |
22769076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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