View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755-Insertion-2 (Length: 933)
Name: NF1755-Insertion-2
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 39369462 - 39369942
Alignment:
| Q |
7 |
agaattatcaatatgtgataaggtgagtatgggaaagataatagaacaatgtaagagaattgagaaacctctaactttaca----gatggggattgttgc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39369462 |
agaattatcaatatgtgataaggtgagtatgggaaagataatagaacaatgtaagagaattgagaaacctctaactttacatacagatggggattgttgc |
39369561 |
T |
|
| Q |
103 |
cttgacttttatcctaaatttgtcaaatttttatgtagtgtgttgaagaaacttatgacataaggataaccatgaatgaagattgggaagaaagtaaaaa |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369562 |
cttgacttttatcctaaatt-gtcaaatttttatgtagtgtgttgaagaaacttatgacataaggataaccatgaatgaagattgggaagaaagtaaaaa |
39369660 |
T |
|
| Q |
203 |
acnnnnnnnaaagttattttgtttgggatcatgcaaataaaatgctgcttaattaatatgccgtgccaatatacgctttggtgattgacacccatcaaaa |
302 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39369661 |
actttttttaaagtt-ttttgtttgggatcatgcaaataaaatgctgcttaat----atgacgtgccaatatatgctttggtgattgacacccatcaaaa |
39369755 |
T |
|
| Q |
303 |
ctagtcttacaacaatattgaaggtgtattgtataatcttaagatnnnnnnnnnnnnnnnnnnnngtgcctttgtaactttacatttgtgc----attgt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
39369756 |
ctagtcttacaacaatattgaaggtgtattgtataatcttaagatgagagaagagtgagagagaggtgcctttgtaactttacatttgtgcattaattgt |
39369855 |
T |
|
| Q |
399 |
ttccttgactttattcctgaattagtaagttttatgtcgtacgtgtactgaagaagcttgtgaggaacctttgtaacttcccttgac |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369856 |
ttccttgactttattcctgaattagtaagttttatgtcgtacgtgtattgaagaagcttgtgaggaacctttgtaacttcccttgac |
39369942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 544 - 931
Target Start/End: Original strand, 39370000 - 39370385
Alignment:
| Q |
544 |
aattgattgacacctattgaaacccttcttaaaatagtaatgaaggtgtacaatattaagatgagaaaagattgtgagagaaacctttgtaactttatag |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39370000 |
aattgattgacacctattgaaacccttcttaaaatagtaatgaaggtgtacaatattaagatgagaaaagattgtgagagaaacctttgtaactttatag |
39370099 |
T |
|
| Q |
644 |
ttaagcattgttggcttatcnnnnnnn-ctttctttctaaattgacaaatttccatatgtagtgtgttgaagaagcttgcgaggtagcataaacttgcat |
742 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39370100 |
ttaagcattgttggcttatctttcttttctttctttctcaattgacaaatttccat--gtagtgtgttgaagaagcttgcgaggtagcataaacttgcat |
39370197 |
T |
|
| Q |
743 |
gaaggaaaagattgttgagtgttggcaattgcaacagatagatagatggatggatagatctagagg-aaaaagtacaacacttatgcttgaagaaaatcg |
841 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
39370198 |
gaaggaaaagattgttgagtgtaggcaattgcaacagatagata----gatagatagatctagaggaaaaaagtacaacacgtatgctggaagaaaatcg |
39370293 |
T |
|
| Q |
842 |
tacataagc--caacatgcaaccatttaacatcgtccatcatccaaatacattatgtatttacgttatacaaacattatgctctataaatag |
931 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39370294 |
tacataagccacaacatgcaaccatttaacatcgtccatcatccaaatacattatgtatttacgttatacaaacattatgctctataaatag |
39370385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University