View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1755-Insertion-20 (Length: 564)

Name: NF1755-Insertion-20
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1755-Insertion-20
NF1755-Insertion-20
[»] chr7 (24 HSPs)
chr7 (8-262)||(6350621-6350879)
chr7 (407-564)||(6350357-6350514)
chr7 (393-538)||(33387490-33387637)
chr7 (401-531)||(7003524-7003653)
chr7 (401-531)||(7049395-7049524)
chr7 (462-538)||(13072043-13072119)
chr7 (442-538)||(21420055-21420151)
chr7 (419-538)||(32198872-32198991)
chr7 (405-469)||(36659070-36659134)
chr7 (402-478)||(44832729-44832805)
chr7 (402-450)||(49010640-49010688)
chr7 (418-485)||(23581250-23581317)
chr7 (403-485)||(23090231-23090313)
chr7 (402-484)||(28836988-28837070)
chr7 (430-538)||(8722525-8722633)
chr7 (401-460)||(8866941-8867000)
chr7 (411-485)||(31251965-31252039)
chr7 (449-495)||(48614137-48614183)
chr7 (436-485)||(553569-553618)
chr7 (463-540)||(8867640-8867717)
chr7 (402-483)||(33386831-33386911)
chr7 (463-540)||(33685745-33685822)
chr7 (435-531)||(32073529-32073625)
chr7 (401-449)||(33686461-33686509)
[»] chr2 (21 HSPs)
chr2 (76-181)||(35081986-35082093)
chr2 (418-538)||(21556283-21556403)
chr2 (420-503)||(18829074-18829157)
chr2 (402-485)||(37621905-37621988)
chr2 (401-507)||(15441489-15441595)
chr2 (436-538)||(18829830-18829932)
chr2 (393-538)||(17373669-17373814)
chr2 (7-52)||(35084185-35084230)
chr2 (401-461)||(7071742-7071802)
chr2 (401-469)||(17444236-17444303)
chr2 (401-469)||(26161903-26161970)
chr2 (463-534)||(26238130-26238201)
chr2 (419-478)||(26591296-26591355)
chr2 (401-443)||(12756065-12756107)
chr2 (401-538)||(15512385-15512522)
chr2 (402-488)||(30325429-30325521)
chr2 (435-508)||(40654140-40654213)
chr2 (401-469)||(771632-771700)
chr2 (401-469)||(6403004-6403071)
chr2 (401-469)||(18982443-18982510)
chr2 (401-469)||(41250833-41250900)
[»] chr5 (12 HSPs)
chr5 (401-538)||(23034862-23034998)
chr5 (401-538)||(30297107-30297242)
chr5 (401-469)||(15959146-15959214)
chr5 (404-479)||(8788726-8788801)
chr5 (419-477)||(20368293-20368351)
chr5 (402-538)||(8788018-8788156)
chr5 (401-460)||(12278065-12278124)
chr5 (418-477)||(20362932-20362991)
chr5 (401-469)||(10036806-10036873)
chr5 (401-469)||(26282518-26282585)
chr5 (401-469)||(36292821-36292888)
chr5 (401-469)||(39435596-39435663)
[»] chr4 (34 HSPs)
chr4 (418-540)||(20628655-20628777)
chr4 (402-538)||(20635493-20635629)
chr4 (416-538)||(2941386-2941508)
chr4 (416-538)||(3222232-3222354)
chr4 (418-516)||(5290651-5290749)
chr4 (417-479)||(33846480-33846542)
chr4 (401-531)||(26546456-26546588)
chr4 (401-469)||(13390648-13390716)
chr4 (435-531)||(31854155-31854250)
chr4 (401-460)||(28876524-28876583)
chr4 (435-485)||(13502487-13502537)
chr4 (401-538)||(9415797-9415932)
chr4 (401-469)||(34406484-34406551)
chr4 (401-469)||(44157522-44157590)
chr4 (463-538)||(3292805-3292880)
chr4 (401-460)||(30215956-30216015)
chr4 (401-460)||(33135654-33135713)
chr4 (399-458)||(56226192-56226251)
chr4 (402-460)||(42332983-42333041)
chr4 (401-455)||(50204302-50204356)
chr4 (442-538)||(15742705-15742799)
chr4 (445-538)||(29094332-29094425)
chr4 (463-540)||(42333685-42333762)
chr4 (489-538)||(56226267-56226316)
chr4 (401-469)||(1818554-1818621)
chr4 (466-538)||(9070467-9070538)
chr4 (401-469)||(13013088-13013155)
chr4 (401-469)||(25931609-25931676)
chr4 (401-469)||(26438479-26438546)
chr4 (401-469)||(26449622-26449690)
chr4 (401-469)||(36381549-36381616)
chr4 (401-469)||(43356804-43356871)
chr4 (401-469)||(47501673-47501740)
chr4 (462-538)||(48130161-48130237)
[»] chr8 (14 HSPs)
chr8 (402-538)||(33947257-33947393)
chr8 (401-469)||(3436131-3436199)
chr8 (401-531)||(9878118-9878247)
chr8 (419-478)||(15863523-15863582)
chr8 (401-450)||(32539693-32539742)
chr8 (445-538)||(33532980-33533073)
chr8 (151-191)||(6290214-6290254)
chr8 (402-538)||(33947628-33947763)
chr8 (402-501)||(40401350-40401449)
chr8 (401-538)||(29352261-29352395)
chr8 (401-469)||(24019591-24019658)
chr8 (401-469)||(28524098-28524165)
chr8 (442-526)||(33534788-33534872)
chr8 (401-469)||(39915414-39915481)
[»] chr3 (19 HSPs)
chr3 (120-191)||(11021744-11021815)
chr3 (419-483)||(19814987-19815052)
chr3 (392-484)||(10842491-10842583)
chr3 (411-538)||(5177104-5177231)
chr3 (403-534)||(38415649-38415783)
chr3 (401-459)||(5136191-5136249)
chr3 (402-460)||(11017480-11017538)
chr3 (427-516)||(8257706-8257795)
chr3 (423-538)||(219475-219590)
chr3 (404-538)||(16094283-16094418)
chr3 (435-485)||(218796-218846)
chr3 (403-469)||(27936081-27936147)
chr3 (401-450)||(29564382-29564431)
chr3 (419-460)||(35938141-35938182)
chr3 (405-485)||(485159-485239)
chr3 (401-469)||(19391046-19391113)
chr3 (401-469)||(22967644-22967711)
chr3 (401-469)||(34083322-34083389)
chr3 (401-469)||(39772690-39772757)
[»] chr1 (9 HSPs)
chr1 (393-517)||(17458081-17458204)
chr1 (401-469)||(17446191-17446259)
chr1 (401-469)||(41971457-41971525)
chr1 (402-469)||(15209490-15209557)
chr1 (403-469)||(3829883-3829949)
chr1 (419-538)||(17745041-17745162)
chr1 (422-537)||(9901855-9901968)
chr1 (416-538)||(3829166-3829291)
chr1 (491-537)||(33658895-33658941)
[»] scaffold0134 (1 HSPs)
scaffold0134 (411-538)||(18213-18340)
[»] chr6 (5 HSPs)
chr6 (392-507)||(16793782-16793897)
chr6 (403-538)||(23217804-23217939)
chr6 (438-516)||(28932958-28933036)
chr6 (463-538)||(28996913-28996988)
chr6 (401-469)||(399517-399584)
[»] scaffold0154 (1 HSPs)
scaffold0154 (401-469)||(32113-32181)
[»] scaffold0002 (1 HSPs)
scaffold0002 (401-469)||(479657-479724)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 6350879 - 6350621
Alignment:
Q  8 gaaaattcattatttcactaactgagtttggtacaatggttaagc--ttagctatcatagactaactgcactctatcataactctctctaactgccataa 105  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6350879 gaaaattcattatttcactaactgagtttggtaaaatgcttaagcgtttacctaccatagactaactgcactctatcataactctctctaactgccataa 6350780  T
Q  106 cagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaacggttacaacaaa 203  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6350779 cagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaacggttacaacaga 6350680  T
Q  204 ggttaaaaagagagagttggtaataaagaaattccattttctccatcgttttccctctt 262  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6350679 ggttaaagagagagagttagtaataaagaaattccattttctccatcgttttccctctt 6350621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 407 - 564
Target Start/End: Complemental strand, 6350514 - 6350357
Alignment:
Q  407 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350514 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 6350415  T
Q  507 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtcca 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350414 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtcca 6350357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 538
Target Start/End: Original strand, 33387490 - 33387637
Alignment:
Q  393 tctagttcgcttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagag 490  Q
    ||||| ||||| |||||||| || | ||||||| ||||||| ||||   | || |||||||||||||| | ||| ||||||||||||| |||||| ||      
T  33387490 tctaggtcgctcttttggacgttgcatatattaaagggtcaaaaatgggaaaaaaatctcaaattacagggttataatatgtgttttttattttatagga 33387589  T
Q  491 tcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||| ||||||| ||||||||| |  ||||||||  ||||||||    
T  33387590 tcattgtttagacttcatgtatattacaaggtcaattttgacaattaa 33387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 7003524 - 7003653
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 499  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7003524 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7003621  T
Q  500 agacttcgtgtatattatagagtcaatttcaa 531  Q
    |||||||  |||||||| |  |||||||||||    
T  7003622 agacttcacgtatattacatggtcaatttcaa 7003653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 7049395 - 7049524
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 499  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7049395 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7049492  T
Q  500 agacttcgtgtatattatagagtcaatttcaa 531  Q
    |||||||  |||||||| |  |||||||||||    
T  7049493 agacttcacgtatattacatggtcaatttcaa 7049524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 538
Target Start/End: Complemental strand, 13072119 - 13072043
Alignment:
Q  462 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||||||||||||||||| ||||||  | |||||| |||||||||||  ||||||| || ||||||||||| ||||||    
T  13072119 ttagaatatgtgttttttattttacggggtcatttttcagacttcgcatatattacagggtcaatttcaataattaa 13072043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 21420151 - 21420055
Alignment:
Q  442 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||| |||||||||| | ||||||| | |||||||  ||||| ||| ||||| ||||||||||  |||||||| |  ||||||||||||||||||    
T  21420151 aagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatattacaaggtcaatttcaacaattaa 21420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 538
Target Start/End: Complemental strand, 32198991 - 32198872
Alignment:
Q  419 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagtcattgttcagacttcgtgtatattat 517  Q
    ||||||| |||| || |||||| ||||||||||||||| | | |||||||||||||||||| ||||| |||| ||||| ||||||||  | ||||||||     
T  32198991 tatattagagggccaaaaataagaagaatctcaaattatagggttagaatatgtgtttttatttttacaaga-tcatttttcagactatgcgtatattac 32198893  T
Q  518 agagtcaatttcaacaattaa 538  Q
    |  |||||||| || ||||||    
T  32198892 aaggtcaatttaaataattaa 32198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 36659070 - 36659134
Alignment:
Q  405 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||  ||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||    
T  36659070 ttttggacttcgcgtatattacagggttataaataataaaaatctcaaattacatggtcagaata 36659134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 44832729 - 44832805
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 478  Q
    ||||||||||||| |  ||  ||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||    
T  44832729 cttttttggacttcaactaatttacagggtcaaaaataataagaatctcaaattacagggttaaaatatgtgttttt 44832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 49010640 - 49010688
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctc 450  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  49010640 cttttttggacttcacgtatattacagggtcataaataataaaaatctc 49010688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 485
Target Start/End: Complemental strand, 23581317 - 23581250
Alignment:
Q  418 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    |||||||||||||| | || ||| |||| |||||||||||| | ||||||||||| ||||||||||||    
T  23581317 gtatattatagggttaaaactaaaaagattctcaaattacagggttagaatatgtatttttaatttta 23581250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 485
Target Start/End: Original strand, 23090231 - 23090313
Alignment:
Q  403 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    ||||||||||||||  ||||||| ||||||  ||||||||| ||| | |||||||| | ||| ||||||||||||| ||||||    
T  23090231 ttttttggactttaactatattaaagggtcgaaaataataaaaatattaaattacaagattataatatgtgttttttatttta 23090313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 484
Target Start/End: Complemental strand, 28837070 - 28836988
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 484  Q
    ||||| ||||||| || ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| || ||||||| ||||    
T  28837070 cttttctggacttcacatatattacagggtcataaataataagaatatcaaataacaaggttaaaatttgcgtttttattttt 28836988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 538
Target Start/End: Complemental strand, 8722633 - 8722525
Alignment:
Q  430 gtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttc 529  Q
    ||||||||||||||||||||| ||||||| | | | ||||| ||||||| |||||| | |||||||  ||||||||    ||||||| || | |||||||    
T  8722633 gtcataaataataagaatctcgaattacagggtcataatatatgttttttattttacaaagtcatttatcagactttacatatattacagggacaatttc 8722534  T
Q  530 aacaattaa 538  Q
    || ||||||    
T  8722533 aataattaa 8722525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 8867000 - 8866941
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 460  Q
    |||||||||||||| |||||||||| | ||| ||||||||||| ||| || |||||||||    
T  8867000 gcttttttggacttcacgtatattacaaggttataaataataaaaatttcgaattacatg 8866941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 485
Target Start/End: Complemental strand, 31252039 - 31251965
Alignment:
Q  411 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    ||||| ||||||||| | ||| | | ||||||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  31252039 actttgcgtatattacaaggttaaagataataagaatatcaaaatatatggttagaatatgtgttttttatttta 31251965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 495
Target Start/End: Original strand, 48614137 - 48614183
Alignment:
Q  449 tcaaattacatgtttagaatatgtgtttttaattttaaagagtcatt 495  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  48614137 tcaaattacatatttaaaatatgtgtttttatttttacagagtcatt 48614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 553569 - 553618
Alignment:
Q  436 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||||||||    
T  553569 aataagaataatttcaaattacatgactagaatatgtgtttttaatttta 553618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 540
Target Start/End: Original strand, 8867640 - 8867717
Alignment:
Q  463 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 540  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   ||||||||||| |||||||| |||||||||||    
T  8867640 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattatagggtcaatttgaacaattaatc 8867717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 33386911 - 33386831
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattt 483  Q
    ||||||||||||   | ||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||| ||||||| ||||    
T  33386911 cttttttggactacgcatatattagagggtca-aaacaaaaagaatctcaaattacatgattaaaatatatgttttttattt 33386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 540
Target Start/End: Complemental strand, 33685822 - 33685745
Alignment:
Q  463 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 540  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||| || |||||||| |||||||||||    
T  33685822 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaatc 33685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 531
Target Start/End: Original strand, 32073529 - 32073625
Alignment:
Q  435 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 531  Q
    |||||||||||||  ||||||||||| ||| |||||||| | || |||||| |   ||||| |||||||||||  ||||||| |  |||||||||||    
T  32073529 aaataataagaattgcaaattacatgattaaaatatgtgctatttattttacatgatcatttttcagacttcgcatatattacaaggtcaatttcaa 32073625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 33686461 - 33686509
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatct 449  Q
    ||||||| |||||| |||||||||| ||||| ||||||||||| |||||    
T  33686461 gctttttaggacttcacgtatattacagggttataaataataaaaatct 33686509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 35082093 - 35081986
Alignment:
Q  76 ctctatcataactctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttct 173  Q
    ||||||||||  ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35082093 ctctatcatagttctctctaactgccatagcagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttct 35081994  T
Q  174 tcttcttc 181  Q
    ||||||||    
T  35081993 tcttcttc 35081986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 538
Target Start/End: Complemental strand, 21556403 - 21556283
Alignment:
Q  418 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 517  Q
    |||||||||||||||| |||| | ||||||||||||||||||  ||| ||||||| | ||| |||||| |  |||||| ||||||| |||||||| |||     
T  21556403 gtatattatagggtcaaaaattagaagaatctcaaattacatagttataatatgtatattttattttacaaggtcatttttcagacatcgtgtattttaa 21556304  T
Q  518 agagtcaatttcaacaattaa 538  Q
    |  |||| ||| |||||||||    
T  21556303 atggtcagtttaaacaattaa 21556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 503
Target Start/End: Complemental strand, 18829157 - 18829074
Alignment:
Q  420 atattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagac 503  Q
    |||||||||||||| ||||||||||||||||||||||   | ||||||||||| ||||| |||||| ||  ||||| |||||||    
T  18829157 atattatagggtcaaaaataataagaatctcaaattatgaggttagaatatgtattttttattttacaggatcatttttcagac 18829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 37621905 - 37621988
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    |||||||||||   |||||||||||||||||| || ||| ||||||||||||||||||| ||| ||||| | ||||| ||||||    
T  37621905 cttttttggaccacacgtatattatagggtcaaaagtaagaagaatctcaaattacatggttaaaatatctattttttatttta 37621988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 401 - 507
Target Start/End: Complemental strand, 15441595 - 15441489
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 500  Q
    |||||||||||||| |  ||||||| | ||| | ||||||||||||| ||||||||||   ||||||||| || |||| ||||||||| || ||| ||||    
T  15441595 gcttttttggacttcaactatattacatggtgaaaaataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttca 15441496  T
Q  501 gacttcg 507  Q
    |||||||    
T  15441495 gacttcg 15441489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 538
Target Start/End: Original strand, 18829830 - 18829932
Alignment:
Q  436 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaat 535  Q
    ||||||||||||||||||||||| | |||||||||||| |||| |||||| |  |||||| |||||||||    ||||||| |  ||||||||||| |||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactttacatatattacatggtcaatttcaataat 18829929  T
Q  536 taa 538  Q
    |||    
T  18829930 taa 18829932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 538
Target Start/End: Original strand, 17373669 - 17373814
Alignment:
Q  393 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtc 492  Q
    ||||| || ||||||||||| |  ||||||||||| ||||| |||||  |||||||||||||||||   ||||||||| | ||||| |||||| |  |||    
T  17373669 tctagatcacttttttggacctcgcgtatattataaggtcaaaaatacgaagaatctcaaattacagagttagaatatctattttttattttacatggtc 17373768  T
Q  493 attgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||| ||||||| | | |||| ||| ||  ||||||| |||||||||    
T  17373769 atttttcagacattgggtattttacaggctcaatttaaacaattaa 17373814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 35084230 - 35084185
Alignment:
Q  7 agaaaattcattatttcactaactgagtttggtacaatggttaagc 52  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  35084230 agaaaattcattatttcactaaccgagtttgttacaatggttaagc 35084185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 7071802 - 7071742
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgt 461  Q
    ||||||||||||||  |||||||||  |||| ||||||||||| ||||||||| |||||||    
T  7071802 gcttttttggacttcgcgtatattagtgggttataaataataaaaatctcaaactacatgt 7071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 17444303 - 17444236
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    |||||||||||||| |||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  17444303 gcttttttggacttcacgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 17444236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 26161970 - 26161903
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  26161970 gcttttttggacttcgcgtatattacagggt-ataaataataaaaatctcgaattacatggtcagaata 26161903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 534
Target Start/End: Complemental strand, 26238201 - 26238130
Alignment:
Q  463 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaa 534  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||||||||||||||| |||||    
T  26238201 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatagagtcaatttgaacaa 26238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 478
Target Start/End: Complemental strand, 26591355 - 26591296
Alignment:
Q  419 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 478  Q
    ||||||||||||||| |||||| |||||| | |||||||||| |||||||| || |||||    
T  26591355 tatattatagggtcaaaaataagaagaatatgaaattacatggttagaataagtattttt 26591296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 12756107 - 12756065
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataa 443  Q
    ||||||||||||||  ||||||||||||||| |||||||||||    
T  12756107 gcttttttggacttcgcgtatattatagggttataaataataa 12756065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 538
Target Start/End: Original strand, 15512385 - 15512522
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 500  Q
    |||||||||||||| |  ||||||| || |  | ||||||||| ||||||||||||||   ||||||||| ||||||| |||||  ||  ||||| ||||    
T  15512385 gcttttttggacttcaactatattacagagaaaaaaataataaaaatctcaaattacagagttagaatatatgttttttatttttcagcatcatttttca 15512484  T
Q  501 gacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    || ||| | ||||||  |  ||||||||||| ||||||    
T  15512485 gatttcatatatattgcatggtcaatttcaataattaa 15512522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 488
Target Start/End: Complemental strand, 30325521 - 30325429
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaat------ctcaaattacatgtttagaatatgtgtttttaattttaaag 488  Q
    |||||||||||||   ||||||||||| |||| |||||| |||||       ||||||||||| | ||||||||||||||| |||||||||||    
T  30325521 cttttttggacttcgtgtatattatagagtcaaaaataagaagaaaaaaaaactcaaattacaagattagaatatgtgtttataattttaaag 30325429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 40654140 - 40654213
Alignment:
Q  435 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgt 508  Q
    |||||||||  ||||||||||| | | |||||||||||| |||| | |||| ||||| ||| ||||||||||||    
T  40654140 aaataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttcgt 40654213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 771632 - 771700
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||||| || |||||||| |||||| ||||| ||| | ||||||    
T  771632 gcttttttggacttcgcgtatattacagggttatgaataataaaaatctcgaattatatggtcagaata 771700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 6403071 - 6403004
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  6403071 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 6403004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 18982443 - 18982510
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  18982443 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 18982510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 41250900 - 41250833
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  41250900 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 41250833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 401 - 538
Target Start/End: Original strand, 23034862 - 23034998
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 500  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||||||||| | | ||||||| ||||| |||||| ||||||||| ||||    
T  23034862 gcttttttggacttcacgtatattatagggtcataaatagtaaaaatatcgaattacatggtcataatatgtattttt-attttacagagtcatttttca 23034960  T
Q  501 gacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||||||||||| ||  |||||||||| ||||||    
T  23034961 gacttcgtgtatattacaggatcaatttcaataattaa 23034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 30297242 - 30297107
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 500  Q
    ||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||| | |||||||||||| |||| |||| | |  |||||| || |    
T  30297242 gcttttttggactttacgtatatcacatgatcataaataataagaatctcgaattacagggttagaatatgtgatttttatttaacaacgtcatt-ttga 30297144  T
Q  501 gacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||| ||||||| |  ||||||||||| ||||||    
T  30297143 gacttcgtttatattaca-tgtcaatttcaataattaa 30297107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 15959214 - 15959146
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  15959214 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacatgttcagaata 15959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 404 - 479
Target Start/End: Original strand, 8788726 - 8788801
Alignment:
Q  404 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 479  Q
    |||||||||||||  |||||||||| || | ||||||||||||||||||||||||||  || ||||||||||||||    
T  8788726 tttttggactttaactatattatagagtaaaaaataataagaatctcaaattacatggctaaaatatgtgttttta 8788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 20368351 - 20368293
Alignment:
Q  419 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 477  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||| ||||    
T  20368351 tatattatatggtcaaaaataagaagaatctcaaattacaagtttaaaatatgtctttt 20368293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 538
Target Start/End: Complemental strand, 8788156 - 8788018
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttc 499  Q
    |||||||||||   |||||||||||||||||| |||||  | || ||||||||||||||   ||||||||| ||||||| |||||| || || ||| |||    
T  8788156 cttttttggaccacacgtatattatagggtcaaaaataagaaaaaaatctcaaattacaaagttagaatatttgttttttattttacagggttatttttc 8788057  T
Q  500 agacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||   |||  ||| ||| || |||||||| |||||||||    
T  8788056 aggtatcgcatattttacagtgtcaatttaaacaattaa 8788018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 12278124 - 12278065
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 460  Q
    |||||||||||||| | |||||||| ||||| ||||||||||| ||| || |||||||||    
T  12278124 gcttttttggacttcatgtatattacagggttataaataataaaaatttcgaattacatg 12278065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 477
Target Start/End: Complemental strand, 20362991 - 20362932
Alignment:
Q  418 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 477  Q
    |||||||||| ||||| |||||| ||||||||||||||||| | ||| ||||||| ||||    
T  20362991 gtatattatatggtcaaaaataagaagaatctcaaattacaaggttaaaatatgtctttt 20362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 10036806 - 10036873
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  10036806 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 10036873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 26282585 - 26282518
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26282585 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26282518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 36292888 - 36292821
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36292888 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36292821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 39435596 - 39435663
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    |||||||||||||| |||||| ||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39435596 gcttttttggacttcacgtatcttacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39435663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 540
Target Start/End: Complemental strand, 20628777 - 20628655
Alignment:
Q  418 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 517  Q
    |||||||| ||||| | ||||||||||||| |||||||||| | ||  ||||||||||||| |||||| | ||||||| ||||||||||  ||||||||     
T  20628777 gtatattacagggtaaaaaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatattac 20628678  T
Q  518 agagtcaatttcaacaattaatc 540  Q
    || ||||||||||||||| ||||    
T  20628677 agggtcaatttcaacaatcaatc 20628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 538
Target Start/End: Complemental strand, 20635629 - 20635493
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 501  Q
    ||||||||||||| | ||| |||||||||| | ||||||| ||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| || ||    
T  20635629 cttttttggacttaatgtacattatagggtaaaaaataatgagaatatcaaattacaaggttaaaatatgtgttttttattttacaggttcatttttgag 20635530  T
Q  502 acttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    | ||| | ||||||  |  |||||||| |||||||||    
T  20635529 atttcatatatattgcaaggtcaatttaaacaattaa 20635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 538
Target Start/End: Original strand, 2941386 - 2941508
Alignment:
Q  416 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 515  Q
    |||| ||||||||||||| |||||  |||||| ||||||||||   ||| |||||||||||||| ||||| || |||||| |||||||  ||  ||||||    
T  2941386 acgtgtattatagggtcaaaaatagaaagaatatcaaattacagagttaaaatatgtgtttttatttttacagggtcatttttcagaccacgcctatatt 2941485  T
Q  516 atagagtcaatttcaacaattaa 538  Q
    | |   |||||||||||||||||    
T  2941486 acaagatcaatttcaacaattaa 2941508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 538
Target Start/End: Original strand, 3222232 - 3222354
Alignment:
Q  416 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 515  Q
    |||||||||||||||||| |||||| ||||||||||||| |||   ||||||||||| ||||| |||||| ||  | ||| |||| || | |||||| ||    
T  3222232 acgtatattatagggtcaaaaataagaagaatctcaaatgacagagttagaatatgtatttttcattttacaggattatttttcaaacattgtgtatttt 3222331  T
Q  516 atagagtcaatttcaacaattaa 538  Q
    |  | |||||||| |||||||||    
T  3222332 acggggtcaatttaaacaattaa 3222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 418 - 516
Target Start/End: Complemental strand, 5290749 - 5290651
Alignment:
Q  418 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 516  Q
    |||||||||| ||| | |||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || || ||| || ||||||| ||| |||||    
T  5290749 gtatattatatggtaaaaaataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttcatgtgtatta 5290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 33846480 - 33846542
Alignment:
Q  417 cgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 479  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||    
T  33846480 cgtatattaaagggtcaaaaataagaagaatatcaaattacatggttataatatgtgttttta 33846542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 531
Target Start/End: Complemental strand, 26546588 - 26546456
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatg--tgtttttaattttaaagagtcattgtt 498  Q
    |||||||||||||| |  ||||||| ||||||  ||||||||||||||||||||||||   ||||||| ||  | ||||| |||||| ||||| | | ||    
T  26546588 gcttttttggacttcaactatattacagggtccaaaataataagaatctcaaattacagagttagaatgtgttttttttttattttacagagttaatttt 26546489  T
Q  499 cagacttcgtgtatattatagagtcaatttcaa 531  Q
    |||||||||  ||||||| ||  ||||||||||    
T  26546488 cagacttcgcatatattacaggatcaatttcaa 26546456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 13390716 - 13390648
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  13390716 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 13390648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 531
Target Start/End: Original strand, 31854155 - 31854250
Alignment:
Q  435 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 531  Q
    ||||||||||||| |||||||||| | ||| ||||| ||||||| |||||| || |||||| ||||||||||   ||||||| || |||||||||||    
T  31854155 aaataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttcacatatattacag-gtcaatttcaa 31854250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 28876583 - 28876524
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 460  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||||||||    
T  28876583 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatg 28876524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 13502487 - 13502537
Alignment:
Q  435 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  13502487 aaataagaagaatctcaaattatatgtttaaaatatatgtttttaatttta 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 538
Target Start/End: Original strand, 9415797 - 9415932
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 500  Q
    |||||||||||||| |  |||| || ||||||| ||| ||| |||||||||||||||| | ||| |||||||||| || | ||||  | || ||| ||||    
T  9415797 gcttttttggacttcaactataatacagggtcaaaaagaatcagaatctcaaattacagggttataatatgtgttattta-tttagtgggt-atttttca 9415894  T
Q  501 gacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||  ||||||| || ||||||||||| ||||||    
T  9415895 gacttcgcatatattacagggtcaatttcaataattaa 9415932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 34406551 - 34406484
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||| ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34406551 gcttttttggactttgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34406484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 44157522 - 44157590
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||| |||| | ||||||    
T  44157522 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattgcatggtcagaata 44157590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 538
Target Start/End: Original strand, 3292805 - 3292880
Alignment:
Q  463 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  3292805 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 3292880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 30216015 - 30215956
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 460  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  30216015 gcttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 30215956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 33135713 - 33135654
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 460  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| |||||||||    
T  33135713 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatg 33135654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 56226192 - 56226251
Alignment:
Q  399 tcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattaca 458  Q
    ||||||||||||||||  ||||||||||  ||||  ||||||||||||| ||||||||||    
T  56226192 tcgcttttttggacttctcgtatattatttggtctcaaataataagaatatcaaattaca 56226251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 42333041 - 42332983
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 460  Q
    |||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  42333041 cttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 42332983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 50204356 - 50204302
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 455  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  50204356 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 50204302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 15742705 - 15742799
Alignment:
Q  442 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||| |  |||| | ||||||||  | |||||||| ||| ||||||| |||||||||    
T  15742705 aagaatctcaaa--acagggttagaatatgtgtttttatttttacaaggtcagttttcagactatgcgtatattacagaatcaatttgaacaattaa 15742799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 538
Target Start/End: Complemental strand, 29094425 - 29094332
Alignment:
Q  445 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||||||||| | ||||||||||| ||||| |||||| || || ||| ||||||| | | |||| ||| || |||| ||| |||||||||    
T  29094425 aatctcaaattacagggttagaatatgtattttttattttacagggttatttttcagacattgcgtattttacagggtcattttaaacaattaa 29094332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 540
Target Start/End: Original strand, 42333685 - 42333762
Alignment:
Q  463 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 540  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   |||||||| ||||||||||| |||||||||||    
T  42333685 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattacagagtcaatttgaacaattaatc 42333762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 538
Target Start/End: Original strand, 56226267 - 56226316
Alignment:
Q  489 agtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||||||| || ||||||||||||||||| | ||| |||||||||||||||    
T  56226267 agtcattttttagacttcgtgtatattacaaagttaatttcaacaattaa 56226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 1818554 - 1818621
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  1818554 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 1818621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 538
Target Start/End: Complemental strand, 9070538 - 9070467
Alignment:
Q  466 aatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||||||||  |||||||| |||||| ||||||||||| |||||||| |  |||||||| |||| ||||    
T  9070538 aatatgtgtttttctttttaaag-gtcatttttcagacttcgcgtatattacatggtcaatttgaacagttaa 9070467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 13013088 - 13013155
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  13013088 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 13013155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 25931609 - 25931676
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  25931609 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 25931676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 26438546 - 26438479
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26438546 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26438479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 26449622 - 26449690
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||| ||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26449622 gcttttttgaacttcgcgtatattacaggattataaataataaaaatctcgaattacatggtcagaata 26449690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 36381616 - 36381549
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36381616 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 43356804 - 43356871
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  43356804 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 43356871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 47501673 - 47501740
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  47501673 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 47501740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 538
Target Start/End: Complemental strand, 48130237 - 48130161
Alignment:
Q  462 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||||||||  |||||||| |||||||||    
T  48130237 ttagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatatggtcaatttgaacaattaa 48130161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 402 - 538
Target Start/End: Complemental strand, 33947393 - 33947257
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 501  Q
    ||||||||||||| || ||||||||||||||| | |||  ||||||||||||||||| | ||| |||| ||| ||||| || || ||||||||| |||||    
T  33947393 cttttttggacttcacatatattatagggtcaaacatatgaagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcag 33947294  T
Q  502 acttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||||||  ||||||| |  |||||||| |||||||||    
T  33947293 acttcgcctatattacatggtcaatttgaacaattaa 33947257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 3436131 - 3436199
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||| |||||| ||||||||||||| ||||    
T  3436131 gcttttttggactttgcgtatattacaaggttataaataataaaaatctcgaattacatgtttaaaata 3436199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 531
Target Start/End: Original strand, 9878118 - 9878247
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 499  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||  |||| |||||  ||| || |||| | |||    
T  9878118 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaatacatgttatttaa--ttacagggtcaattttc 9878215  T
Q  500 agacttcgtgtatattatagagtcaatttcaa 531  Q
    ||||||| ||||||||| |  |||||||||||    
T  9878216 agacttcatgtatattacatggtcaatttcaa 9878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 15863523 - 15863582
Alignment:
Q  419 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 478  Q
    ||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||| |||||    
T  15863523 tatattatagggtcaaaaataagaagtatctcaaattacaagtttggaatatgtattttt 15863582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 32539742 - 32539693
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctc 450  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  32539742 gcttttttggacttcacgtattttacagggtgataaataataagaatctc 32539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 538
Target Start/End: Original strand, 33532980 - 33533073
Alignment:
Q  445 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||||||||| | ||| ||| | || ||||| ||||| | ||||||| || |||||||||||| |||||||  ||||||| |||||||||    
T  33532980 aatctcaaattacaaggttataatttatgattttatttttacatagtcattttttagacttcgtgtacattataggatcaatttgaacaattaa 33533073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 6290214 - 6290254
Alignment:
Q  151 cttgcttctcaagtaatctttcttcttcttccattcttaac 191  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  6290214 cttgctcctcaagtaatcttccttcttcttccattcttaac 6290254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 538
Target Start/End: Original strand, 33947628 - 33947763
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 501  Q
    |||||||||||||  |||| |||| ||||||| |||||| | |||| |||||||||| | ||| ||||| |||||||| ||||| |  |||||| |||||    
T  33947628 cttttttggacttagcgtacattagagggtcaaaaataagatgaatttcaaattacagggttaaaatatatgtttttatttttacatggtcatt-ttcag 33947726  T
Q  502 acttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||||   |||||||| |  |||||||| || ||||||    
T  33947727 actttacgtatattacattgtcaatttgaataattaa 33947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 501
Target Start/End: Original strand, 40401350 - 40401449
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 501  Q
    ||||||||||||   | ||||||||||||| | |||||| |||||| |||| ||||| | |||||||||| ||| || ||||| ||| |||||| |||||    
T  40401350 cttttttggactacgcatatattatagggttaaaaataagaagaatatcaatttacaagattagaatatgcgttatttattttcaagtgtcatttttcag 40401449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 538
Target Start/End: Original strand, 29352261 - 29352395
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 500  Q
    ||||||||| |||| |  ||||||| ||| | | ||||||||| | |||||||||||| | |||| |||||||||||| ||||| | | |||||| ||||    
T  29352261 gcttttttgtacttcaactatattacaggataaaaaataataaaagtctcaaattacagggttaggatatgtgttttttatttt-acgggtcatttttca 29352359  T
Q  501 gacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    ||   ||  ||||||| |||||||||||||| ||||||    
T  29352360 ga--gcgcatatattacagagtcaatttcaataattaa 29352395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 24019658 - 24019591
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  24019658 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 24019591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 28524098 - 28524165
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  28524098 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 28524165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 526
Target Start/End: Original strand, 33534788 - 33534872
Alignment:
Q  442 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaat 526  Q
    ||||||||||||||| |   ||| ||| |||  ||||| ||||| | ||||||| || |||||||||||||||||||| ||||||    
T  33534788 aagaatctcaaattataaagttacaatttgttattttatttttacatagtcattatttagacttcgtgtatattatagggtcaat 33534872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 39915414 - 39915481
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39915414 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 11021744 - 11021815
Alignment:
Q  120 gtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaac 191  Q
    ||||||||||  |||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||    
T  11021744 gtggcaagtttgttagagctatgtcaggttacttgctcctcaagtaatcttccatcttcttccattcttaac 11021815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 483
Target Start/End: Original strand, 19814987 - 19815052
Alignment:
Q  419 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattt 483  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  19814987 tatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtggtttttaattt 19815052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 484
Target Start/End: Original strand, 10842491 - 10842583
Alignment:
Q  392 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 484  Q
    |||||| |||| ||| ||||| | || ||||||| |||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||    
T  10842491 atctagatcgcctttctggacatcacatatattaaagggtcataaataggaagaatatcaaattacatggttagaatatgtgtttttattttt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 538
Target Start/End: Complemental strand, 5177231 - 5177104
Alignment:
Q  411 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 510  Q
    |||| |||||||||| | ||| | |||| | || ||||||||||||||||  |  ||||||||||||| |||||| ||| ||||| |||||||||| |||    
T  5177231 acttcacgtatattaaatggtaaaaaattagaaaaatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttcatgt 5177132  T
Q  511 atattatagagtcaatttcaacaattaa 538  Q
     ||||| |  |||||||| |||||||||    
T  5177131 ttattacatggtcaatttgaacaattaa 5177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 534
Target Start/End: Original strand, 38415649 - 38415783
Alignment:
Q  403 ttttttggactttacgtatattatagggtcataaa-taataagaatctcaaattacatgtttagaatatgtg--tttttaattttaaagagtcattgttc 499  Q
    |||||||||||   ||||||||||||||| | ||| ||| ||||||||||||||||| | ||| ||||||||  ||||| |||||| |  |||||| |||    
T  38415649 ttttttggactacgcgtatattatagggtaaaaaaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttc 38415748  T
Q  500 agacttcgtgtatattatagagtcaatttcaacaa 534  Q
    |||| || ||||||||| || |||||||| |||||    
T  38415749 agacatcatgtatattacagcgtcaatttgaacaa 38415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 401 - 459
Target Start/End: Original strand, 5136191 - 5136249
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacat 459  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||    
T  5136191 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacat 5136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 11017538 - 11017480
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 460  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| || |||||||||    
T  11017538 cttttttggacttcacgtatattatagggttataaataataaaaatttcgaattacatg 11017480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 8257706 - 8257795
Alignment:
Q  427 agggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 516  Q
    |||||||||||||||||||||||  ||||||||| | | ||||||||||||| |||||| || |||||| || | |||||| | ||||||    
T  8257706 agggtcataaataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttttaaacttcgcgaatatta 8257795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 538
Target Start/End: Original strand, 219475 - 219590
Alignment:
Q  423 ttatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagt 522  Q
    |||||| |||| |||||| |||||| ||||||| || | ||| ||||| | ||||| |||||| |  |||||| ||||||| ||  |||| ||| |||||    
T  219475 ttatagagtcaaaaataagaagaatttcaaattgcaaggttaaaatatctattttttattttacaatgtcatttttcagacatcacgtattttacagagt 219574  T
Q  523 caatttcaacaattaa 538  Q
    |||||| |||||||||    
T  219575 caatttaaacaattaa 219590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 538
Target Start/End: Complemental strand, 16094418 - 16094283
Alignment:
Q  404 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattttaaagagtcattgttcaga 502  Q
    ||||||||||| |  ||||||| ||||  | |||| ||||| ||||||||||||| | ||| |||||||  ||||| |||||| || |||| | ||||||    
T  16094418 tttttggacttcaactatattacagggcaaaaaattataaggatctcaaattacagggttataatatgtatttttttattttacagggtcaattttcaga 16094319  T
Q  503 cttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||  |||||||  | ||||||||||| ||||||    
T  16094318 cttcgcatatattactgggtcaatttcaataattaa 16094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 485
Target Start/End: Complemental strand, 218846 - 218796
Alignment:
Q  435 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    |||||||||||||| ||||||||| | ||| ||||||||||||| ||||||    
T  218846 aaataataagaatcccaaattacagggttataatatgtgttttttatttta 218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 27936081 - 27936147
Alignment:
Q  403 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||  ||||||||| ||||| |||||||||||  ||||||||| ||||| | ||||||    
T  27936081 ttttttggacttcgcgtatattacagggttataaataataaatatctcaaatcacatggtcagaata 27936147  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 29564431 - 29564382
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctc 450  Q
    |||||||||||||| |||||||| | | ||||||||||||||| ||||||    
T  29564431 gcttttttggacttcacgtatatgacatggtcataaataataataatctc 29564382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 460
Target Start/End: Original strand, 35938141 - 35938182
Alignment:
Q  419 tatattatagggtcataaataataagaatctcaaattacatg 460  Q
    |||||||| |||||| ||||||||||||||| ||||||||||    
T  35938141 tatattatggggtcaaaaataataagaatcttaaattacatg 35938182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 485
Target Start/End: Complemental strand, 485239 - 485159
Alignment:
Q  405 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 485  Q
    |||||||| | |||||||||| ||||| | |||||  |||||||||||||||||  | |||||||| ||| |||| |||||    
T  485239 ttttggacatcacgtatattagagggtaaaaaatagaaagaatctcaaattacagatgtagaatatatgtctttattttta 485159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 19391046 - 19391113
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  19391046 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 19391113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 22967711 - 22967644
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  22967711 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 22967644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 34083389 - 34083322
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34083389 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34083322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 39772690 - 39772757
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39772690 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39772757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 517
Target Start/End: Original strand, 17458081 - 17458204
Alignment:
Q  393 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagt 491  Q
    ||||| || ||||| |||||||  | |||||||||| |||| |||||| ||||||||||||||||| |  ||||||||||||||||| ||| | |||| |    
T  17458081 tctaggtcacttttatggacttcgcatatattatagcgtcaaaaataagaagaatctcaaattaca-gagtagaatatgtgtttttattttaacaaga-t 17458178  T
Q  492 cattgttcagacttcgtgtatattat 517  Q
    |||| ||||||||  |||||||||||    
T  17458179 catttttcagactaagtgtatattat 17458204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 17446191 - 17446259
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  17446191 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 17446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 41971525 - 41971457
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||||  ||||||||||| |||||||| ||||||||| ||||||    
T  41971525 gcttttttggacttcgcgtatattacagggctataaataataaaaatctcaagttacatgttcagaata 41971457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 469
Target Start/End: Complemental strand, 15209557 - 15209490
Alignment:
Q  402 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    |||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||||| ||||||    
T  15209557 cttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatgttcagaata 15209490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 3829883 - 3829949
Alignment:
Q  403 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  3829883 ttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 3829949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 538
Target Start/End: Original strand, 17745041 - 17745162
Alignment:
Q  419 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt--tttaattttaaagagtcattgttcagacttcgtgtatatta 516  Q
    ||||||| | ||||| ||||||||| ||||||||||| |||| ||||||||||| ||  ||| |||||| ||  ||||| |||||||||||  |||||||    
T  17745041 tatattacacggtcaaaaataataaaaatctcaaattgcatggttagaatatgtttttattttattttacaggttcatttttcagacttcgaatatatta 17745140  T
Q  517 tagagtcaatttcaacaattaa 538  Q
     |  |||||| |||| ||||||    
T  17745141 catggtcaatgtcaataattaa 17745162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 537
Target Start/End: Original strand, 9901855 - 9901968
Alignment:
Q  422 attatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagag 521  Q
    |||||||||||| |||||| |||||| | |||||||||| |||||  |||||||||| |||||| ||  | ||| |||| || ||| || ||||| ||||    
T  9901855 attatagggtcaaaaataagaagaatataaaattacatggttaga--atgtgttttttattttataggattatttttcaaacatcgcgtgtattacagag 9901952  T
Q  522 tcaatttcaacaatta 537  Q
    | ||||| ||||||||    
T  9901953 ttaatttgaacaatta 9901968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 538
Target Start/End: Complemental strand, 3829291 - 3829166
Alignment:
Q  416 acgtatattatag---ggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtat 512  Q
    |||||||||||||   ||||| |||||| |||||  |||| |||||   ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||    
T  3829291 acgtatattatagggtggtcaaaaataagaagaaattcaagttacaaagttagaatatatgttttgtattttacagggtcatttttcagacataatgtat 3829192  T
Q  513 attatagagtcaatttcaacaattaa 538  Q
    |||| || |||||||| |||||||||    
T  3829191 attacagggtcaatttgaacaattaa 3829166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 537
Target Start/End: Original strand, 33658895 - 33658941
Alignment:
Q  491 tcattgttcagacttcgtgtatattatagagtcaatttcaacaatta 537  Q
    ||||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  33658895 tcatttttctgacttcgtgtatattatagagtcaatttgaacgatta 33658941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 538
Target Start/End: Original strand, 18213 - 18340
Alignment:
Q  411 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 510  Q
    |||| ||| |||||| ||||||||||||||||||||||| || ||||| | ||| ||||||| ||||  ||||||  | ||||||  ||| ||||||  |    
T  18213 acttcacgaatattacagggtcataaataataagaatcttaacttacaggattataatatgttttttatattttactgggtcatttgtcatacttcgctt 18312  T
Q  511 atattatagagtcaatttcaacaattaa 538  Q
    |||||| ||  |||||||||| ||||||    
T  18313 atattacaggatcaatttcaataattaa 18340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 507
Target Start/End: Complemental strand, 16793897 - 16793782
Alignment:
Q  392 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagt 491  Q
    |||||| ||| |||| ||||||||  |||||||| | ||| | ||||||||| | |||| ||||| |  ||||||||||||| |||| |||||| |||||    
T  16793897 atctaggtcgtttttctggactttgtgtatattacaaggtaaaaaataataaaactctcgaattatagatttagaatatgtgctttttattttacagagt 16793798  T
Q  492 cattgttcagacttcg 507  Q
     ||| |||||||||||    
T  16793797 aatttttcagacttcg 16793782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 538
Target Start/End: Original strand, 23217804 - 23217939
Alignment:
Q  403 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcaga 502  Q
    |||||||||||| ||| |||||| |  |||||||||||||||||| |  | ||||| | ||||||||||||||||  ||||||    |||||| ||||||    
T  23217804 ttttttggacttcacgaatattacaaagtcataaataataagaatattgagttacagggttagaatatgtgttttatattttactaggtcatttttcaga 23217903  T
Q  503 cttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    | ||   ||||||| || ||||||||||| ||||||    
T  23217904 catcacttatattacagggtcaatttcaataattaa 23217939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 516
Target Start/End: Original strand, 28932958 - 28933036
Alignment:
Q  438 taataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 516  Q
    |||||||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| |||||||||||  |||||||    
T  28932958 taataagaatttcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcgcatatatta 28933036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 538
Target Start/End: Complemental strand, 28996988 - 28996913
Alignment:
Q  463 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 538  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  28996988 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 28996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 399517 - 399584
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  399517 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 399584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 32113 - 32181
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||    
T  32113 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaata 32181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 469
Target Start/End: Complemental strand, 479724 - 479657
Alignment:
Q  401 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 469  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  479724 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 479657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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