View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1755-Insertion-6 (Length: 878)

Name: NF1755-Insertion-6
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1755-Insertion-6
NF1755-Insertion-6
[»] chr8 (1 HSPs)
chr8 (549-878)||(7494681-7495015)
[»] chr7 (2 HSPs)
chr7 (73-681)||(35048700-35049306)
chr7 (115-593)||(15635628-15636103)
[»] chr3 (3 HSPs)
chr3 (73-681)||(53324877-53325484)
chr3 (81-248)||(412277-412443)
chr3 (81-248)||(413580-413746)
[»] chr1 (5 HSPs)
chr1 (73-681)||(14122374-14122981)
chr1 (73-609)||(41698403-41698937)
chr1 (73-609)||(41703997-41704531)
chr1 (81-248)||(24343057-24343223)
chr1 (81-248)||(24355435-24355601)
[»] chr4 (3 HSPs)
chr4 (73-681)||(20007385-20007994)
chr4 (73-609)||(54078013-54078547)
chr4 (560-681)||(49622455-49622579)
[»] chr5 (5 HSPs)
chr5 (121-387)||(9284458-9284721)
chr5 (81-507)||(23556789-23557212)
chr5 (133-533)||(9285145-9285534)
chr5 (499-593)||(9284813-9284908)
chr5 (489-562)||(23556713-23556787)
[»] chr6 (3 HSPs)
chr6 (81-248)||(24186681-24186847)
chr6 (112-254)||(8534369-8534511)
chr6 (114-218)||(33525968-33526072)
[»] chr2 (2 HSPs)
chr2 (479-674)||(1177867-1178063)
chr2 (352-396)||(1178155-1178201)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 549 - 878
Target Start/End: Complemental strand, 7495015 - 7494681
Alignment:
Q  549 tcttctagtatttggtaaattcttcttcaggactaaatgtcatcctaaccttaagttcatcttcctgaacaatattttcttcaaaattatcatctcaatt 648  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7495015 tcttgtagcatttggtaaattcttcttccggactaaatgtcatcctaaccttaagttcatcttcatgaacaatattttcttcaaaattatcatctcaatt 7494916  T
Q  649 ctcatttatgtgatcactctcctcttggtcagatgaggtaaatcttacccccactagtgcaccga-nnnnnnngaaacaagatacttaaattaatcaact 747  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||    
T  7494915 ctcatttatgtgatcactctcctctttgtcagatgaggtaaatcttacccccactagtgccccgattttttttaaaacaagatacttaaattaatcaact 7494816  T
Q  748 aacataataagccaagacaacaagaatctgtccaactaaataagaaaaagcaa-caatagac-aattatactcactctttcagactgtgtc-aaagaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||| |||||||||||||| ||||||| ||||||||    
T  7494815 aacataataagccaagacaacaagaatctgtccaactaagtaagaaaaagcaataaatagacaaattacactcactctttcagtctgtgtcaaaagaaga 7494716  T
Q  845 g-tttgggatcgatgaataatactcggttttgtgc 878  Q
    | ||||||||| |||||||||| ||||||||||||    
T  7494715 gttttgggatcaatgaataatagtcggttttgtgc 7494681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 73 - 681
Target Start/End: Complemental strand, 35049306 - 35048700
Alignment:
Q  73 tttgaatagcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacc 172  Q
    ||||||||||||| ||||||||||| |||||||||||  || ||| | ||||| || | ||||||||||||||||||||||||  ||||||||||||| |    
T  35049306 tttgaatagcttcagcatctcctgtcccaagtcgaagc-cgtcttgctttgtcaatgtaatttctacaatctttttctccaaatgtaagattatcatatc 35049208  T
Q  173 cattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattctt 272  Q
    ||||  |||||||||||||| | || |||||  ||||||||||||| ||||||||||||||||  ||||||||||||||| || |||||||  |||||||    
T  35049207 catttgcttcaacaaccatagatcggaaatttctgcttacattaataccagcttgatcattaatatctaacctcctttttgtatgagggtccaaattctt 35049108  T
Q  273 gttgcatctaaaacatcttgatttcattgggcttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatacaca 372  Q
     |||||||||||| |||| |||||  | ||||||||| |||||||||||||||||||||  || ||| ||   ||||| ||||||||||||||||| |||    
T  35049107 attgcatctaaaatatctagattttgtcgggcttaatccatgattatgctcaagagcaa--cttttgtaattgtaatttttccatctaaagacatagaca 35049010  T
Q  373 catttactctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaat 472  Q
     ||||||||||||| |||| ||||||||| |  |||||||||| ||||| |  |||||| | |||||||||||||||||||||||| ||||  ||||| |    
T  35049009 tatttactctagccatacactgtgctcttatggtaggatttggtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagt 35048910  T
Q  473 aaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattct 571  Q
    |||| |||||||    ||||| | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||  |||| || |||||| ||| ||||    
T  35048909 aaagtattttttt---ccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttgtaatatttgataacttct 35048813  T
Q  572 tcttcaggactaaatgtcatcctaaccttaagt---tcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactct 668  Q
    ||||||| |||||||||||||| || | || ||   |||||| | |||||||||||| |||| ||||| ||||| |  || |||||||||||||||  ||    
T  35048812 tcttcagaactaaatgtcatcccaatcctaggttcctcatctgcttgaacaatatttgcttctaaattttcatcactgttttcatttatgtgatcaacct 35048713  T
Q  669 cctcttggtcaga 681  Q
    |||||||| ||||    
T  35048712 cctcttggacaga 35048700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 115 - 593
Target Start/End: Original strand, 15635628 - 15636103
Alignment:
Q  115 cttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcacttcaacaaccataaaccgaaaattgatgcttacat 214  Q
    ||||| |||||||| | |||||||| |||||||||| ||||  |||||||||||||  ||||  |||||||||||||| | || |||||  |||||||||    
T  15635628 cttactttgtctatgtaatttctacgatctttttcttcaaatgtaagattatcatattcatttgcttcaacaaccatagatcggaaatttctgcttacat 15635727  T
Q  215 taattccagcttgatcattaacctctaacctcctttttataggagggtctgaattcttgttgcatctaaaacatcttgatttcattgggcttaattcatg 314  Q
    ||||  |||||||||||||||  ||||||||||||||| || |||||||  ||||||| |||||||||||| |||| ||||   ||||||||||||||||    
T  15635728 taatatcagcttgatcattaatatctaacctcctttttgtatgagggtccaaattcttattgcatctaaaatatctagattctgttgggcttaattcatg 15635827  T
Q  315 attatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatacacacatttactctagccttacattgtgctcttgtaataggatttg 414  Q
    ||||||||||||||   |||  ||| ||   ||||| ||||||||||||||| |||||  |||||||||||| |||||||||||||| |  |||| ||||    
T  15635828 attatgctcaagag--taacgtttgtaattgtaatttttccatctaaagacagacacatgtttactctagccatacattgtgctcttatggtagggtttg 15635925  T
Q  415 gcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcccatcatctccattttttgaaatgat 514  Q
    | ||||| |  |||||| | |||||||||||||||||||||||| ||||  ||||| ||||| |||||   || ||||| | | |||||||| || ||||    
T  15635926 gtttcaaaaggttctttgagttactcacatagcttcttgcacgagtacatcctagagtaaagtatttt---tttccatcctttgcatttttttaattgat 15636022  T
Q  515 tttactaattccaaaacccgtaca-cgagcataattcttct-agtatttggtaaattcttcttcaggactaaatgtcatcc 593  Q
    ||||  | ||||||||||| |||| | ||||||| |||| | | |||||||||| ||||||||||  ||||||||||||||    
T  15636023 tttaacagttccaaaacccatacatctagcataactcttgtaaatatttggtaatttcttcttcataactaaatgtcatcc 15636103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 73 - 681
Target Start/End: Original strand, 53324877 - 53325484
Alignment:
Q  73 tttgaatagcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacc 172  Q
    ||||||||||||| ||||||||| | |||||||||||  || |||||||||||||| | ||||||||||||||||||||||||  ||||||||||||| |    
T  53324877 tttgaatagcttcagcatctcctatcccaagtcgaagc-cgtcttacattgtctatgtaatttctacaatctttttctccaaatgtaagattatcatatc 53324975  T
Q  173 cattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattctt 272  Q
    ||||  ||| |||||||||| | |  |||||  |||||||||||||  |||||||||||||||  ||||||||||||||| || |||||||  |||||||    
T  53324976 cattggcttaaacaaccatagatcagaaatttctgcttacattaatatcagcttgatcattaatatctaacctcctttttgtatgagggtccaaattctt 53325075  T
Q  273 gttgcatctaaaacatcttgatttcattgggcttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatacaca 372  Q
     |||||||||||| |||| |||||  ||||||||||| |||||||||||||||||||||  || ||| ||   ||||| ||||||||||||||  |||||    
T  53325076 attgcatctaaaatatctagattttgttgggcttaatccatgattatgctcaagagcaa--cttttgtaattgtaatttttccatctaaagactgacaca 53325173  T
Q  373 catttactctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaat 472  Q
     ||||||||||||  |||||||||||||| |  ||||||||||  |||| |  |||||| | |||||||||||||||||||||| | ||||  ||||| |    
T  53325174 tatttactctagctatacattgtgctcttatggtaggatttggtctcaaaaggttctttgagttactcacatagcttcttgcacaagtacatcctagagt 53325273  T
Q  473 aaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattct 571  Q
    |||| ||||||  || ||||| | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||| |||| || |||||||||| ||||    
T  53325274 aaagtattttt--tttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcataactcttgtaatatttggtaatttct 53325371  T
Q  572 tcttcaggactaaatgtcatcctaaccttaag---ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactct 668  Q
    ||||||| | |||||||||||| || | || |   ||||||| | |||||||||||| |||| ||||| | ||| | ||| |||||||||||||||  ||    
T  53325372 tcttcagaattaaatgtcatcccaatcctaggttcttcatctgcttgaacaatatttgcttctaaatttttatcactattttcatttatgtgatcaacct 53325471  T
Q  669 cctcttggtcaga 681  Q
    |||||||| ||||    
T  53325472 cctcttggacaga 53325484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 412277 - 412443
Alignment:
Q  81 gcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcact 180  Q
    ||||| ||||||||||| |||||||| | | || ||||| |||||||| |  |||||||| ||||||||||||||  | ||||| |||||||||||  ||    
T  412277 gcttcagcatctcctgtcccaagtcgtaat-cgtcttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttgct 412375  T
Q  181 tcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcct 248  Q
    ||| | ||||   | ||||||||  | || |||||||| |||||||||||||| |  |||||||||||    
T  412376 tcaccgaccaaggatcgaaaatttctactcacattaatcccagcttgatcattgagttctaacctcct 412443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 413746 - 413580
Alignment:
Q  81 gcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcact 180  Q
    ||||| ||||||||||| |||||||| | | || ||||| |||||||| |  |||||||| ||||||||||||||  | ||||| |||||||||||  ||    
T  413746 gcttcagcatctcctgtcccaagtcgtaat-cgtcttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttgct 413648  T
Q  181 tcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcct 248  Q
    ||| | ||||   | ||||||||  | ||  ||||||| |||||||||||||| |  |||||||||||    
T  413647 tcaccgaccaaggatcgaaaatttctactcgcattaatcccagcttgatcattgagttctaacctcct 413580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 73 - 681
Target Start/End: Complemental strand, 14122981 - 14122374
Alignment:
Q  73 tttgaatagcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacc 172  Q
    |||||||||||||  |||||||| | |||||||||||| || ||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||| |    
T  14122981 tttgaatagcttcaacatctcctatcccaagtcgaagt-cgtcttactttgtctatgtaatttctacaatctttttctccaaaagtaagattatcatatc 14122883  T
Q  173 cattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattctt 272  Q
    ||||  | |||||||||||| | || |||||  ||||||||||||| ||||||||||||||||  ||||||||||||||| || |||| ||  |||||||    
T  14122882 catttgcatcaacaaccatatatcggaaatttctgcttacattaataccagcttgatcattaatatctaacctcctttttgtatgaggatccaaattctt 14122783  T
Q  273 gttgcatctaaaacatcttgatttcattgggcttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatacaca 372  Q
     |||||||||||| || | |||||  ||||||||||||||||| |||||||||||||  |||| ||| ||    |||| || |||||||||||  |||||    
T  14122782 attgcatctaaaatatatagattttgttgggcttaattcatgactatgctcaagagc--aacttttgtaattgcaattttttcatctaaagactgacaca 14122685  T
Q  373 catttactctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaat 472  Q
     ||||||||||||| |||||||||||||| | ||||||||||| ||||| |  ||||||   |||||||||||||||||||||| | ||||  ||||| |    
T  14122684 tatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtacatcctagagt 14122585  T
Q  473 aaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattct 571  Q
    |||| ||||||  || ||||| | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||  |||| || |||||||||| ||||    
T  14122584 aaagtattttt--tttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatttggtaacttct 14122487  T
Q  572 tcttcaggactaaatgtcatcctaacctta---agttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactct 668  Q
    ||||||| | |||||||||||| || | ||     ||||||| | |||||||||||| |||| ||||| ||||| | ||| ||||||| |||||||  ||    
T  14122486 tcttcagaattaaatgtcatcccaatcctagattcttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttaggtgatcaacct 14122387  T
Q  669 cctcttggtcaga 681  Q
    |||||||| ||||    
T  14122386 cctcttggacaga 14122374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 73 - 609
Target Start/End: Complemental strand, 41698937 - 41698403
Alignment:
Q  73 tttgaatagcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacc 172  Q
    ||||||| ||||| ||||||||||| |||||||||||  ||||| || |||||||| |  ||||||  ||||||||| || ||  |||| |||||||| |    
T  41698937 tttgaatggcttcagcatctcctgtcccaagtcgaagc-cgcctcactttgtctatgtagtttctagcatctttttccccgaatgtaaggttatcatatc 41698839  T
Q  173 cattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattctt 272  Q
    || |  |||||||||||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| || ||||||||||||  |||||||  ||||||    
T  41698838 cacttgcttcaacaaccatagaccgaaaatttctacttacattaatcccagcttggtcattaacctccaatctcctttttatactagggtctatattctt 41698739  T
Q  273 gttgcatctaaaacatcttgatttcattgggc---ttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatac 369  Q
    ||||||||||||| ||||||||||  |||| |   |||| ||||||||||||||||||||  |||  | ||||    ||||||||||||| |||||| ||    
T  41698738 gttgcatctaaaatatcttgatttgcttggacttattaagtcatgattatgctcaagagc--aaccttagaaatagcaattgttccatctgaagacacac 41698641  T
Q  370 acacatttactctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctag 469  Q
    | ||||||| ||||||| |||| |||| | |  |  ||||||||||||| || ||||| ||  | |||||| ||||||||||||||||  ||||| ||||    
T  41698640 atacatttattctagccatacagtgtgttttcatgctaggatttggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctag 41698541  T
Q  470 aataaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaat 568  Q
    | ||||  | |||   || ||||||||||||||||||| | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||  || |    
T  41698540 agtaaaatacttt---tttccatcatctccattttttgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttgtcaact 41698444  T
Q  569 tcttcttcaggactaaatgtcatcctaaccttaagttcatc 609  Q
    ||||||  || | ||||| |||| | ||||||| |||||||    
T  41698443 tcttctgtagaattaaatttcatgccaaccttaggttcatc 41698403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 73 - 609
Target Start/End: Complemental strand, 41704531 - 41703997
Alignment:
Q  73 tttgaatagcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacc 172  Q
    ||||||| ||||| ||||||||||| |||||||||||  ||||| || |||||||| |  ||||||  ||||||||| || ||  |||| |||||||| |    
T  41704531 tttgaatggcttcagcatctcctgtcccaagtcgaagc-cgcctcactttgtctatgtagtttctagcatctttttccccgaatgtaaggttatcatatc 41704433  T
Q  173 cattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattctt 272  Q
    || |  |||||||||||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| || ||||||||||||  |||||||  ||||||    
T  41704432 cacttgcttcaacaaccatagaccgaaaatttctacttacattaatcccagcttggtcattaacctccaatctcctttttatactagggtctatattctt 41704333  T
Q  273 gttgcatctaaaacatcttgatttcattgggc---ttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatac 369  Q
    ||||||||||||| ||||||||||  |||| |   |||| ||||||||||||||||||||  |||  | ||||    ||||||||||||| |||||| ||    
T  41704332 gttgcatctaaaatatcttgatttgcttggacttattaagtcatgattatgctcaagagc--aaccttagaaatagcaattgttccatctgaagacacac 41704235  T
Q  370 acacatttactctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctag 469  Q
    | ||||||| ||||||| |||| |||| | |  |  ||||||||||||| || ||||| ||  | |||||| ||||||||||||||||  ||||| ||||    
T  41704234 atacatttattctagccatacagtgtgttttcatgctaggatttggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctag 41704135  T
Q  470 aataaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaat 568  Q
    | ||||  | |||   || ||||||||||||||||||| | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||  || |    
T  41704134 agtaaaatacttt---tttccatcatctccattttttgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttgtcaact 41704038  T
Q  569 tcttcttcaggactaaatgtcatcctaaccttaagttcatc 609  Q
    ||||||  || | ||||| |||| | ||||||| |||||||    
T  41704037 tcttctgtagaattaaatttcatgccaaccttaggttcatc 41703997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 24343223 - 24343057
Alignment:
Q  81 gcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcact 180  Q
    ||||| ||||||||||| |||||||| | | || ||||| |||||||| |  |||||||| ||||||||||||||  | ||||| |||||||||||  ||    
T  24343223 gcttcagcatctcctgtcccaagtcgtaat-cgtcttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttgct 24343125  T
Q  181 tcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcct 248  Q
    ||| | ||||   | ||||||||  | || |||||||| |||||||||||||| |  |||||||||||    
T  24343124 tcaccgaccaaggatcgaaaatttctactcacattaatcccagcttgatcattgagttctaacctcct 24343057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 24355601 - 24355435
Alignment:
Q  81 gcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcact 180  Q
    ||||| ||||||||||| |||||||| | || | ||||| |||||||| |  ||||| || ||||||||||||||  | ||||| |||||||||||  ||    
T  24355601 gcttcagcatctcctgtcccaagtcgtaatt-gtcttactttgtctatgtggtttctgcagtctttttctccaaatgtgagattctcatacccatttgct 24355503  T
Q  181 tcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcct 248  Q
    ||| | ||||   | ||||||||  | || |||||||| |||||||||||||| |  |||||||||||    
T  24355502 tcaccgaccaaggatcgaaaatttctactcacattaatcccagcttgatcattgagttctaacctcct 24355435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 73 - 681
Target Start/End: Original strand, 20007385 - 20007994
Alignment:
Q  73 tttgaatagcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacc 172  Q
    |||||||||||||  |||||||| | |||||||||||| || ||||| ||||| || | ||||||||||||||||||||||||| ||||||||||||| |    
T  20007385 tttgaatagcttcaacatctcctatcccaagtcgaagt-cgtcttactttgtccatgtaatttctacaatctttttctccaaaagtaagattatcatatc 20007483  T
Q  173 cattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattctt 272  Q
    ||||  |||||||||||||| | || |||||  ||||||||||||| ||||||||||||||||  || |||||||||||| || |||| ||  |||||||    
T  20007484 catttgcttcaacaaccatatatcggaaatttctgcttacattaataccagcttgatcattaatatccaacctcctttttgtatgaggatccaaattctt 20007583  T
Q  273 gttgcatctaaaacatcttgatttcattgggcttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatacaca 372  Q
     |||||||||||| || | |||||  ||||||||||||||||| |||||||||||||  |||| ||| ||    |||| || |||||||||||  |||||    
T  20007584 attgcatctaaaatatatagattttgttgggcttaattcatgactatgctcaagagc--aacttttgtaattgcaattttttcatctaaagactgacaca 20007681  T
Q  373 catttactctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaat 472  Q
     ||||||||||||| |||||||||||||| | ||||||||||| ||||| |  ||||||   |||||||||||||||||||||| | ||||  ||||| |    
T  20007682 tatttactctagccatacattgtgctcttatgataggatttggtttcaaaaggttctttgtgttactcacatagcttcttgcacaagtacatcctagagt 20007781  T
Q  473 aaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattct 571  Q
    |||| ||||||| || ||||| | | ||||||||||| ||||||||  | ||||||||||| |||| | ||||||  |||| || ||| |||||| ||||    
T  20007782 aaagtattttttttttccatcctttgcattttttgaattgattttaacagttccaaaacccatacatctagcatagctcttataatatctggtaacttct 20007881  T
Q  572 tcttcaggactaaatgtcatcctaacctta---agttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactct 668  Q
    ||||||  | |||||||||||| || | ||     ||||| | | |||||||||||| |||| ||||| | ||| | ||| ||||||| |||||||  ||    
T  20007882 tcttcataattaaatgtcatcccaatcctagattcttcatttgcttgaacaatatttgcttctaaattttaatcactattttcatttaggtgatcaacct 20007981  T
Q  669 cctcttggtcaga 681  Q
    |||||||| ||||    
T  20007982 cctcttggacaga 20007994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 73 - 609
Target Start/End: Original strand, 54078013 - 54078547
Alignment:
Q  73 tttgaatagcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacc 172  Q
    ||||||| ||||| ||||||||||| |||||||||||  ||||| || |||||||| |  ||||||  ||||||||| || ||  |||| |||||||| |    
T  54078013 tttgaatggcttcagcatctcctgtcccaagtcgaagc-cgcctcactttgtctatgtagtttctagcatctttttccccgaatgtaaggttatcatatc 54078111  T
Q  173 cattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattctt 272  Q
    || |  |||||||||||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| || ||||||||||||  |||||||  ||||||    
T  54078112 cacttgcttcaacaaccatagaccgaaaatttctacttacattaatcccagcttggtcattaacctccaatctcctttttatactagggtctatattctt 54078211  T
Q  273 gttgcatctaaaacatcttgatttcattgggc---ttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatac 369  Q
    ||||||||||||| ||||||||||  |||| |   |||| ||||||||||||||||||||  |||  | ||||    ||||||||||||| |||||| ||    
T  54078212 gttgcatctaaaatatcttgatttgcttggacttattaagtcatgattatgctcaagagc--aaccttagaaatagcaattgttccatctgaagacacac 54078309  T
Q  370 acacatttactctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctag 469  Q
    | ||||||| ||||||| |||| |||| | |  |  ||||||||||||| || ||||| ||  | |||||| ||||||||||||||||  ||||| ||||    
T  54078310 atacatttattctagccatacagtgtgttttcatgctaggatttggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctag 54078409  T
Q  470 aataaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaat 568  Q
    | ||||  | |||   || ||||||||||||||||||| | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||  || |    
T  54078410 agtaaaatacttt---tttccatcatctccattttttgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttgtcaact 54078506  T
Q  569 tcttcttcaggactaaatgtcatcctaaccttaagttcatc 609  Q
    ||||||  || | ||||| |||| | ||||||| |||||||    
T  54078507 tcttctgtagaattaaatttcatgccaaccttaggttcatc 54078547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 681
Target Start/End: Complemental strand, 49622579 - 49622455
Alignment:
Q  560 ttggtaaattcttcttcaggactaaatgtcatcctaaccttaagttcatcttc---ctgaacaatattttcttcaaaattatcatctcaattctcattta 656  Q
    ||||||| ||||||||||| |||||||||||||| || | || ||||||| ||    |||||||||||| |||| ||||| |||||    || |||||||    
T  49622579 ttggtaacttcttcttcagaactaaatgtcatcccaatcctaggttcatcatctgattgaacaatatttgcttctaaattttcatcattgttttcattta 49622480  T
Q  657 tgtgatcactctcctcttggtcaga 681  Q
    ||||||||  |||||||||| ||||    
T  49622479 tgtgatcaacctcctcttggacaga 49622455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 8e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 121 - 387
Target Start/End: Original strand, 9284458 - 9284721
Alignment:
Q  121 ttgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcacttcaacaaccataaaccgaaaattgatgcttacattaattc 220  Q
    ||||||||||  ||||||||||||||| ||||||   ||| ||||||||| |||||| |||||||||| ||   || |||||   |||||||||||||      
T  9284458 ttgtctatatagtttctacaatcttttcctccaagtgtaaaattatcatatccattcgcttcaacaacaattgcccaaaaatgtctgcttacattaatcg 9284557  T
Q  221 cagcttgatcattaacctctaacctcctttttataggagggtctgaattcttgttgcatctaaaacatcttgatttcattgggcttaattcatgattatg 320  Q
    || ||||| |||||| ||||||||||||||| |||  |||||| ||||||||||||||||||||| ||||||||||  || || ||||||||||||||||    
T  9284558 caacttgaccattaaactctaacctcctttt-atacaagggtcagaattcttgttgcatctaaaatatcttgatttggttagggttaattcatgattatg 9284656  T
Q  321 ctcaagagcaaaactcttgaaaccataattgttccatctaaagacatacacacatttactctagcct 387  Q
    ||  |||||  |||||||||||   |||| |||| |||||| |||||| ||| ||||||||||||||    
T  9284657 cttgagagc--aactcttgaaattgtaatcgttctatctaatgacatatacatatttactctagcct 9284721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 81 - 507
Target Start/End: Complemental strand, 23557212 - 23556789
Alignment:
Q  81 gcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcact 180  Q
    ||||| ||||||||||| || ||||||||  ||||| || |||||||| |  ||||||  ||||||||  || ||  |||| |||||||| ||| |  ||    
T  23557212 gcttcagcatctcctgtccctagtcgaagc-cgcctcactttgtctatgtagtttctagcatcttttttcccgaatgtaaggttatcatatccacttgct 23557114  T
Q  181 tcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcctttttataggagggtctgaattcttgttgcatc 280  Q
    |||||||||||| ||||||||||  | ||||||||||| |||||||| ||||||||||| || ||||||||||||  |||||||  ||||||||||||||    
T  23557113 tcaacaaccatagaccgaaaatttctacttacattaatcccagcttggtcattaacctccaatctcctttttatactagggtctatattcttgttgcatc 23557014  T
Q  281 taaaacatcttgatttcattgg---gcttaattcatgattatgctcaagagcaaaactcttgaaaccataattgttccatctaaagacatacacacattt 377  Q
    ||||| ||||||||||  ||||     |||| |||| |||||||||||||||  |||  | ||||    ||||||||||||| |||||| ||| ||||||    
T  23557013 taaaatatcttgatttgcttggatttattaagtcattattatgctcaagagc--aaccttagaaatagcaattgttccatctgaagacacacatacattt 23556916  T
Q  378 actctagccttacattgtgctcttgtaataggatttggcttcaacatattctttaaattactcacatagcttcttgcacgactacactctagaataaagc 477  Q
    | ||||||| |||| |||| | |  |  ||||||||||||| || ||||| ||  | |||||| ||||||||||||||||  ||||| ||||| ||||      
T  23556915 attctagccatacagtgtgttttcatgctaggatttggctttaaaatatttttggacttactcgcatagcttcttgcacggttacaccctagagtaaaat 23556816  T
Q  478 attttttcttcccatcatctccattttttg 507  Q
    | |||   || |||||||||||||||||||    
T  23556815 acttt---tttccatcatctccattttttg 23556789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 133 - 533
Target Start/End: Complemental strand, 9285534 - 9285145
Alignment:
Q  133 tttctacaatctttttctccaaaactaagattatcatacccattcacttcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcat 232  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||  |||||||||||||| |   || ||   | || || |||||||||||||||||||    
T  9285534 tttctgcaatctttttctctaaat-taagattatcatacccatttgcttcaacaaccatagataaaacatgtctactaac-ttaattccagcttgatcat 9285437  T
Q  233 taacctctaacctcctttttataggagggtctgaattcttgttgcatctaaaacatcttgatttcattgggcttaattcatgattatgctcaagagcaaa 332  Q
    ||| |||||||||| ||||| || |||||||  |||||||||||||||||||| ||||||| ||  || |||||| ||||||||||| || || |  | |    
T  9285436 taagctctaacctcatttttgtatgagggtccaaattcttgttgcatctaaaatatcttgacttggtt-ggcttagttcatgattattcttaata--aca 9285340  T
Q  333 actcttgaaaccataattgttccatctaaagacatacacacatttactctagccttacattgtgctcttgtaataggatttggcttcaacatattcttta 432  Q
    |||||| | |   | ||||||||||||| ||    ||||||||| ||| ||| ||||||||||| || ||| ||||||||||||||||| | |||||||     
T  9285339 actcttcatattgttattgttccatctagag----acacacattcactttagacttacattgtgttcgtgtgataggatttggcttcaaaagattctttg 9285244  T
Q  433 aattactcacatagcttcttgcacgactacactctagaataaagcattttttcttcccatcatctccattttttgaaatgattttactaattccaaaacc 532  Q
    | || ||||  || |||| || ||| | |||   |||| ||||| ||||||| ||  ||||||||| | |||||||| | ||||||| ||||||||||||    
T  9285243 acttgctcatgtaacttcatggacggcaacatggtagagtaaagtattttttttt--catcatctctaatttttgaacttattttaccaattccaaaacc 9285146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 593
Target Start/End: Original strand, 9284813 - 9284908
Alignment:
Q  499 cattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttcaggactaaatgtcatcc 593  Q
    ||||||||||| | |||||||  |||||||| ||| |||| | | |||||||||| || ||| |||||| ||||||||| | ||||||||||||||    
T  9284813 cattttttgaatttattttaccgattccaaagcccatacatcaaacataattcttgtaatatgtggtaatttcttcttcggaactaaatgtcatcc 9284908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 23556787 - 23556713
Alignment:
Q  489 ccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttg 562  Q
    ||||||||||||||||||| | ||||||| |||| |||||||||  |||| | |||||||||||| || ||||||    
T  23556787 ccatcatctccattttttgtactgattttgctaactccaaaacctatacatctagcataattcttgtaatatttg 23556713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 24186681 - 24186847
Alignment:
Q  81 gcttcggcatctcctgttccaagtcgaagttcgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcact 180  Q
    ||||| ||||||||||| |||||||| | | || ||||| |||||||| |  |||||||| ||||||||||||||  | ||||| |||||||||||  ||    
T  24186681 gcttcagcatctcctgtcccaagtcgtaat-cgtcttactttgtctatgtggtttctacagtctttttctccaaatgtgagattctcatacccatttgct 24186779  T
Q  181 tcaacaaccataaaccgaaaattgatgcttacattaattccagcttgatcattaacctctaacctcct 248  Q
    ||| | ||||   | ||||||||  | || |||||||| ||||||||||||||||  |||||||||||    
T  24186780 tcaccgaccaaggatcgaaaatttctactcacattaatcccagcttgatcattaagttctaacctcct 24186847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 8534369 - 8534511
Alignment:
Q  112 cgccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcacttcaacaaccataaaccgaaaattgatgctta 211  Q
    ||||| || ||||||||||  |||||||| |||||||| |||||  | ||||| || ||||| ||  |||||||||||||| | | ||||||  | || |    
T  8534369 cgcctgaccttgtctatatagtttctacagtctttttcaccaaatgtgagattctcgtacccgtttgcttcaacaaccatagatctaaaatttctactga 8534468  T
Q  212 cattaattccagcttgatcattaacctctaacctcctttttat 254  Q
    |||| || || ||||||||||||| ||||||  ||||||||||    
T  8534469 cattgatacctgcttgatcattaatctctaatttcctttttat 8534511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 33525968 - 33526072
Alignment:
Q  114 ccttacattgtctatatcatttctacaatctttttctccaaaactaagattatcatacccattcacttcaacaaccataaaccgaaaattgatgcttaca 213  Q
    |||||| ||||||||||  |||||||||||||||||| ||||  ||||||| ||||||| |||   | ||||||| | | | ||||||||  ||||||||    
T  33525968 ccttactttgtctatatagtttctacaatctttttcttcaaatgtaagattctcatacctatttgttgcaacaactaaagatcgaaaatttctgcttaca 33526067  T
Q  214 ttaat 218  Q
    |||||    
T  33526068 ttaat 33526072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 479 - 674
Target Start/End: Complemental strand, 1178063 - 1177867
Alignment:
Q  479 ttttttcttcccatcatctccattttttgaaatgattttactaattccaaaacccgtaca-cgagcataattcttctagtatttggtaaattcttcttca 577  Q
    |||||| || ||||||| | |||| ||| || ||||||||| ||||||||||||| |||| | |||||||| |||  | |||||  |||   ||||||||    
T  1178063 ttttttttttccatcatttgcattcttttaattgattttaccaattccaaaacccatacatcaagcataatactttcaatattttataa---cttcttca 1177967  T
Q  578 ggactaaatgtcatcctaaccttaagttcat---cttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctctt 674  Q
    | || ||||| ||||| ||||||||||||||   |||| |||| ||||||| |||| |||||  |||  ||||  ||||||||||||||  |||||||||    
T  1177966 gaacaaaatgacatcccaaccttaagttcatctgcttcttgaataatatttgcttctaaatttccattgcaatattcatttatgtgatcgatctcctctt 1177867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 1178201 - 1178155
Alignment:
Q  352 ttccatctaaagacataca--cacatttactctagccttacattgtg 396  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||    
T  1178201 ttccatctaaagacacacaagcacatttactctagccttacattgtg 1178155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University