View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1755-Insertion-9 (Length: 840)

Name: NF1755-Insertion-9
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1755-Insertion-9
NF1755-Insertion-9
[»] chr1 (5 HSPs)
chr1 (7-725)||(47566970-47567686)
chr1 (7-543)||(47573857-47574389)
chr1 (328-543)||(47583887-47584106)
chr1 (7-264)||(47583550-47583806)
chr1 (781-840)||(47567742-47567801)
[»] chr8 (1 HSPs)
chr8 (481-543)||(10401928-10401990)
[»] chr6 (9 HSPs)
chr6 (487-543)||(20236382-20236438)
chr6 (487-543)||(22130366-22130422)
chr6 (487-543)||(22206567-22206623)
chr6 (485-543)||(21968553-21968611)
chr6 (490-543)||(18979959-18980012)
chr6 (490-543)||(20084255-20084308)
chr6 (487-543)||(20232973-20233029)
chr6 (487-543)||(22126957-22127013)
chr6 (485-543)||(22086446-22086504)


Alignment Details
Target: chr1 (Bit Score: 653; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 7 - 725
Target Start/End: Original strand, 47566970 - 47567686
Alignment:
Q  7 aagaatgagcatgatattctcaaataaagctgtaatgtggaaaaatatacttctatttgcaaacaaaaagaagcatttcctttaaccatgtaacttatag 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47566970 aagaatgagcatgatattctcaaataaagctgtaatgtagaaaaatatacttctatttgcaaacaaaaggaagcatttcctttaaccatgtaacttatag 47567069  T
Q  107 aattcaaaattgttgttgtagttgggaatgatacgacctctttggagtccttgcaatttgaactagtcaata-ccaagcagcgcagcaaacagatttgct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||  | ||||||||||| ||    
T  47567070 aattcaaaattgttgttgtagttgggaatgatacgacctctttggagtccttgcaatttgaactagccaatatccaagcagc--aacaaacagatttact 47567167  T
Q  206 gcagaaaataggaaaggcaaaggtggatctggagaagtttacaaggtaaatatatcaactagtagcactacattaaatgataatatcaattatacgcatt 305  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567168 gcagaaaataggaaaggcaaaggtggatttggagaagtctacaaggtaaatatatcaactagtagcactacattaaatgataatatcaattatacgcatt 47567267  T
Q  306 ttccgtattgacttcttttaaatgttgttcagggaattcttttggatggacaagaaattgctgcgaagagacttacgaaaagctccgggcaaggtgcatc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  47567268 ttccgtattgacttcttttaaatgttgttcagggaattcttttggatggacaagaaattgctgcgaagagacttacgaaaagctccgg-caaggtgcaac 47567366  T
Q  406 agagttaaaaatgaggttcttgttatagccaagcttcaacacagacatctagtgagattactaggatattatttggaagatgagaaaatacttatctatg 505  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47567367 agagttaaaaatgaggttcttgttatagccaagcttcaacatagacatctagtgagattactaggatattatttggaagatgagaagatacttatctatg 47567466  T
Q  506 agtatgtgccaaacaagagtcttgattactttttatttctcaacataccctcacattattctttaatcatattaccacagtttctctgcatatataaatt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567467 agtatgtgccaaacaagagtcttgattactttttatttctcaacataccctcacattattctttaatcatattaccacagtttctctgcatatataaatt 47567566  T
Q  606 acccaccactaccttactgtaactgttcaacttcaagcaacaacactaattatgattactcaccaaacaacacatacaataccaaccttaaaactctttt 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567567 acccaccactaccttactgtaactgttcaacttcaagcaacaacactaattatgattactcaccaaacaacacatacaataccaaccttaaaactctttt 47567666  T
Q  706 gtcatggctttcctccattt 725  Q
    ||||||||||||||||||||    
T  47567667 gtcatggctttcctccattt 47567686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 543
Target Start/End: Original strand, 47573857 - 47574389
Alignment:
Q  7 aagaatgagcatgatattctcaaataaagctgtaatgtggaaaaatatacttctatttgcaaacaaaaagaagcatttcctttaaccatgtaacttatag 106  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  47573857 aagaatcagcatgatattctcaaagaaagctgcaatgtggaaaaatgtatttctatttgcaaacaaaaagatgcatttcctttaaccatataacttatag 47573956  T
Q  107 aattcaaaattgttgttgtagttgggaatgatacgacctctttggagtccttgcaatttgaactagtcaatacc-aagcagcgcagcaaacagatttgct 205  Q
    |||| ||| |||||  ||||||||||||||| |  | ||||||||| ||||||||||||||| | | | | |   |||||||  | ||||||||||||||    
T  47573957 aattaaaacttgtttctgtagttgggaatgacattaactctttggaatccttgcaatttgaatttgccgaaattgaagcagc--aacaaacagatttgct 47574054  T
Q  206 gcagaaaataggaaaggcaaaggtggatctggagaagtttacaaggtaaatatatcaactagtagcactacattaaatgataatatcaattatacgcatt 305  Q
    ||||| || |||| |||||||||||||| ||||||||| |||||||||||||||||      ||| | ||| |||||  ||||||| | | ||||  |||    
T  47574055 gcagataacaggataggcaaaggtggatttggagaagtctacaaggtaaatatatc------tagtattacgttaaacaataatatgact-atacctatt 47574147  T
Q  306 ttccgtattgacttcttttaaatgttgttcagggaattcttttggatggacaagaaattgctgcgaagagacttacgaaaagctccgggcaaggtgcatc 405  Q
    |||| ||  |||||||| || |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |  ||||||||||||||||||      
T  47574148 ttccataacgacttcttatatatgttgttcagggaattcttttggatggacaagaaattgcggtgaagaggcttacaagtagctccgggcaaggtgcagt 47574247  T
Q  406 agagtt-aaaaatgaggttcttgttatagccaagcttcaacacagacatctagtgagattactaggatattatttggaagat---gagaaaatacttatc 501  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||   ||||| ||||| |||    
T  47574248 agagtttaaaaatgaggttcatgttatagccaagcttcaacacagaaatctagtaagattactaggattttgtttggaagatgaggagaagatactaatc 47574347  T
Q  502 tatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  47574348 tttgagtatgtgccaaacaagagtcttgattactttttattt 47574389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 328 - 543
Target Start/End: Original strand, 47583887 - 47584106
Alignment:
Q  328 tgttgttcagggaattcttttggatggacaagaaattgctgcgaagagacttacgaaaagctccgggcaaggtgcatcagagtt-aaaaatgaggttctt 426  Q
    |||| |||||||| |||||||||||||||||||| |||||| |||||| ||||| | |||||| || |||||||||  |||||| |||||||||||||      
T  47583887 tgttattcagggagttcttttggatggacaagaagttgctgtgaagaggcttacaagaagctctggacaaggtgcagtagagtttaaaaatgaggttcaa 47583986  T
Q  427 gttatagccaagcttcaacacagacatctagtgagattactaggatattatttggaagat---gagaaaatacttatctatgagtatgtgccaaacaaga 523  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||   ||||| ||||||||||||||||||||||| ||||| |    
T  47583987 gttatagccaagcttcaacacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaa 47584086  T
Q  524 gtcttgattactttttattt 543  Q
    |||||||||||||| |||||    
T  47584087 gtcttgattactttctattt 47584106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 47583550 - 47583806
Alignment:
Q  7 aagaatgagcatgatattctcaaataaagctgtaatgtggaaaaatatacttctatttgcaaacaaaaagaagcatttcctttaaccatgtaacttatag 106  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| |||| |||| ||||||||||    
T  47583550 aagaatcagcatgatattctcaaagaaagctgtaatgtggaaaaatatactactatttgcatataaaaagaggcatttcttttagccatataacttatag 47583649  T
Q  107 aattcaaaattgttgttgtagttgggaatgatacgacctctttggagtccttgcaatttgaactagtcaata-ccaagcagcgcagcaaacagatttgct 205  Q
    ||||||||  ||||||||||||||| ||||||   ||| ||||||| || || ||||||||| | | ||| |   |||||  ||| ||||||||||||||    
T  47583650 aattcaaacgtgttgttgtagttggaaatgatgttaccactttggaatcgttacaatttgaatttgccaaaattgaagca--gcaacaaacagatttgct 47583747  T
Q  206 gcagaaaataggaaaggcaaaggtggatctggagaagtttacaaggtaaatatatcaac 264  Q
    |||||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||||||    
T  47583748 gcagaaaacaggataggcaaaggtggatttggagaagtctacaaggtaaataaatcaac 47583806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 781 - 840
Target Start/End: Original strand, 47567742 - 47567801
Alignment:
Q  781 tatctttgggctcttcatgtgccacgtccaaattggaccaagcagagttttcgtttttac 840  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  47567742 tatctttggcctcttcatgtgccaagtccaaattggaccaagcacagttttcgtttttac 47567801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 481 - 543
Target Start/End: Complemental strand, 10401990 - 10401928
Alignment:
Q  481 gaagatgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||    
T  10401990 gaagaggagaaaatacttatatatgaatatgtgccgaacaagagtcttgatcactttttattt 10401928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 543
Target Start/End: Complemental strand, 20236438 - 20236382
Alignment:
Q  487 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  20236438 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 20236382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 543
Target Start/End: Complemental strand, 22130422 - 22130366
Alignment:
Q  487 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  22130422 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 22130366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 22206567 - 22206623
Alignment:
Q  487 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  22206567 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 22206623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 21968611 - 21968553
Alignment:
Q  485 atgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    ||||||| |||||||| ||||| |||||  | |||||||||||||||||||||||||||    
T  21968611 atgagaagatacttatttatgaatatgtttccaacaagagtcttgattactttttattt 21968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 18980012 - 18979959
Alignment:
Q  490 aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||| |||||    
T  18980012 aaaatacttatttatgaatatgtgccaaacaaaagtcttgatttctttctattt 18979959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 20084308 - 20084255
Alignment:
Q  490 aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||| |||||    
T  20084308 aaaatacttatttatgaatatgtgccaaacaaaagtcttgatttctttctattt 20084255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 20232973 - 20233029
Alignment:
Q  487 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||| | |||||||||    
T  20232973 gagaaaatacttatttatgaatatgtgccaaacaagggacttgatcagtttttattt 20233029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 22126957 - 22127013
Alignment:
Q  487 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||| | |||||||||    
T  22126957 gagaaaatacttatttatgaatatgtgccaaacaagggacttgatcagtttttattt 22127013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 22086504 - 22086446
Alignment:
Q  485 atgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 543  Q
    ||||||| |||||||| ||||| |||||  | ||||| |||||||||||||||||||||    
T  22086504 atgagaagatacttatttatgaatatgtttccaacaaaagtcttgattactttttattt 22086446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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