View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17550_high_13 (Length: 339)

Name: NF17550_high_13
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17550_high_13
NF17550_high_13
[»] chr8 (1 HSPs)
chr8 (1-320)||(40919555-40919874)
[»] chr4 (4 HSPs)
chr4 (2-256)||(5530570-5530824)
chr4 (25-257)||(5936410-5936642)
chr4 (2-146)||(5922978-5923122)
chr4 (2-104)||(38178777-38178879)
[»] chr3 (1 HSPs)
chr3 (2-257)||(53148130-53148385)
[»] chr2 (1 HSPs)
chr2 (2-257)||(11734138-11734393)
[»] chr7 (1 HSPs)
chr7 (16-107)||(34839859-34839950)
[»] chr1 (1 HSPs)
chr1 (19-262)||(45454438-45454681)


Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 40919555 - 40919874
Alignment:
Q  1 gtaccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40919555 gtaccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaat 40919654  T
Q  101 tattaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40919655 tattaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtc 40919754  T
Q  201 cattagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacattcactctctcaacttgaaggtgtgactttcctacataacttcct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40919755 cattagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacattcactctctcaagttgaaggtgtgactttcctacataacttcct 40919854  T
Q  301 gaaggatctatcccatgttc 320  Q
    ||||||||||||||||||||    
T  40919855 gaaggatctatcccatgttc 40919874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 5530824 - 5530570
Alignment:
Q  2 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 101  Q
    |||| |||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||    
T  5530824 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5530725  T
Q  102 attaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtcc 201  Q
    ||| ||||| ||| | || ||||||||||| ||||| || ||||| || |  ||| | || ||||| || | ||| ||||| ||||| |||||||| |||    
T  5530724 attcccagcaccactctgaccaaacacaaaattatccggtctaaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatcc 5530625  T
Q  202 attagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacat 256  Q
    || ||||| ||||| |||||| ||||||||||||||||||||||||| |||||||    
T  5530624 ataagaaccgctctcggaacaaatcttccaccacttgcttcattgtaatacacat 5530570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 5936410 - 5936642
Alignment:
Q  25 tcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaattattaccagctccattttgtccaa 124  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||| | |||||||    
T  5936410 tcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagttattaccagcaccactctgtccaa 5936509  T
Q  125 acacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtccattagaacagctctaggaacata 224  Q
    | ||||||||||| || ||||| || |  ||  | || ||||| || | ||||||||| || || |||||||| ||||| ||||| |||||||||||  |    
T  5936510 agacaaagttatccggtctaaagatctgaccgtacggtccagaccggacactgtccatcgttcccggttcaagatccataagaaccgctctaggaacgaa 5936609  T
Q  225 tcttccaccacttgcttcattgtagtacacatt 257  Q
     ||||||||||||||||||||||| ||||||||    
T  5936610 ccttccaccacttgcttcattgtaatacacatt 5936642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 5922978 - 5923122
Alignment:
Q  2 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 101  Q
    |||| |||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||    
T  5922978 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5923077  T
Q  102 attaccagctccattttgtccaaacacaaagttatcaggcctaaa 146  Q
    ||||||||| ||| | || ||||||||||||||||| || |||||    
T  5923078 attaccagcaccactctgaccaaacacaaagttatccggtctaaa 5923122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 38178777 - 38178879
Alignment:
Q  2 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 101  Q
    ||||||||||||| |||||||||||||| ||||| |  |||||||| | ||| |||||||| |  ||||| ||||| |||||||| ||||| ||||||||    
T  38178777 taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt 38178876  T
Q  102 att 104  Q
    |||    
T  38178877 att 38178879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 53148130 - 53148385
Alignment:
Q  2 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 101  Q
    ||||||||||||| || |||||||| |||||||| |||||||||||||||||||| ||||| |  ||||| ||||| || ||||| ||||| ||||||||    
T  53148130 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 53148229  T
Q  102 attaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtcc 201  Q
    ||||||||| |||  |||||||||||| || |||||||| | ||| || || || || |||||||| |  | ||| ||||| ||||| |||||||| |||    
T  53148230 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 53148329  T
Q  202 attagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacatt 257  Q
    || ||||| |||||||||||||| |||||||||   ||||||||||| ||||||||    
T  53148330 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacatt 53148385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 11734138 - 11734393
Alignment:
Q  2 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 101  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||    
T  11734138 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaatt 11734237  T
Q  102 attaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtcc 201  Q
    ||| ||||| |||   || || |||||||| |||||||| | ||| || |  ||||| ||||| || |  |     ||||| ||||| || ||||| |||    
T  11734238 attcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatcc 11734337  T
Q  202 attagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacatt 257  Q
    || |||||||| |  |||||||| |||||||||||||| |||||||| || |||||    
T  11734338 ataagaacagcgcgtggaacataccttccaccacttgcctcattgtaataaacatt 11734393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 34839950 - 34839859
Alignment:
Q  16 tcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaattattacc 107  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||    
T  34839950 tcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttacc 34839859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 45454438 - 45454681
Alignment:
Q  19 caattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaattattaccagctccatttt 118  Q
    ||||||||||| || || |  ||||||||||| || |||||||| |  ||||||||||| || || || ||||| ||||| || || || || ||    |    
T  45454438 caattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcaccggact 45454537  T
Q  119 gtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtccattagaacagctctagg 218  Q
    ||||||| ||||||||||||||||  || || |  ||  |||||||||| |  |  || ||||| || ||||| || || ||||| ||||||||||||||    
T  45454538 gtccaaaaacaaagttatcaggccggaaaatctgaccgtatggaccagatctgacgctatccatagtccctggctccagatccatgagaacagctctagg 45454637  T
Q  219 aacatatcttccaccacttgcttcattgtagtacacattcactc 262  Q
    |||  ||||||||| ||| ||||| |||||||||||||| ||||    
T  45454638 aacgaatcttccacaactcgcttcgttgtagtacacattgactc 45454681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University