View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17550_high_15 (Length: 304)

Name: NF17550_high_15
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17550_high_15
NF17550_high_15
[»] chr4 (1 HSPs)
chr4 (4-298)||(20053424-20053715)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 20053715 - 20053424
Alignment:
Q  4 agttcgttcgctggttggtttgatcctgattacattatattttgattaaatcagtttgagttgcaattggttcaactgattttaannnnnnnaacttctt 103  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||| ||||| |       ||||||||    
T  20053715 agttagttcgcgggttggtttgatcctgattacattatagtttgattaaatcaggttgaattgcaattgattcaactaatttttatcattttaacttctt 20053616  T
Q  104 tttatttatcatttggtttagttatggttgaactaattgaaccatgatccagatgtctaaccggttggatattctctcgtccaattttttaaaaattggt 203  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||||| |||||||||   |||| |||||||||||| |||||||||    
T  20053615 tttatttatcatttggtttaattgtggttgaactaattgaaccgtgatctagatgtctaatcggttggat---ctctggtccaatttttttaaaattggt 20053519  T
Q  204 aaagaggcctggagagacactaaatccaaatttctttccatgttggtcccattgctggattaaagactttctttttcctcctttttcatctcact 298  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20053518 aaagaggcctagagagacactaaatccaaatttatttccatgttggtcccattgctggattaaagactttctttttcctcctttttcatgtcact 20053424  T

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