View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_high_2 (Length: 687)
Name: NF17550_high_2
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_high_2 |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 357 - 681
Target Start/End: Complemental strand, 33698486 - 33698158
Alignment:
| Q |
357 |
aactatcttagctcaactacttttaccggttatcattcattattcattagtagaatgttcacattcaagagacatgttgatttggtagtacttacttgtg |
456 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33698486 |
aactatcttagctcaactacttttaccggttatcattcattattcattagtagcatgtttacattcaagagacatgttgatttggtagtacttacttgtg |
33698387 |
T |
|
| Q |
457 |
ttgaggaatnnnnnnnttaaagtgataaagaggttgaaaattcaatatttacatttcacacccttaacataatacttctaatagt----attaaaaagat |
552 |
Q |
| |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
33698386 |
ttgaggaataaaaaaattatagtgataaagaggttgaaaattcaatatttacatttcacacccttaacataatacttctaatatttactattaaaaagaa |
33698287 |
T |
|
| Q |
553 |
atatgtctggacatagtttaaatacatatgtctggcctggacatagtttaaagagttgttgcattgcaatttggcactatcaattatttagtactttttc |
652 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33698286 |
atatgtctggacatagtttaaatacatatgtctggcctggacatagtttaaagagttgttgcattgcaatttggcactatcaattatttagcactttttc |
33698187 |
T |
|
| Q |
653 |
attaattaaacctttcccatattcttcga |
681 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
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| T |
33698186 |
attaattaaacctttcccattttcttcga |
33698158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 33698793 - 33698469
Alignment:
| Q |
18 |
acttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccactactacctacaaataatttatcactaaataacggtcccttat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33698793 |
acttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccactactacctacaaataatttatcactaaataacggtcccttat |
33698694 |
T |
|
| Q |
118 |
caatgcgactattgtaaagtttactatannnnnnnnnnnnnn-ggttacaaaagtttactatatatgagaagtcttatgtcttcacaattattcccttaa |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33698693 |
caatgcgactattgtaaagtttactatatatatatatttttttggttacaaaagtttactatatatgataagtcttatgtcttcacaattattcccttaa |
33698594 |
T |
|
| Q |
217 |
atataggagtacttgtttaatccaatatgtgattataaaattgaatagttattttcttgttaaacaggattatataataacatatttgaattatgtctag |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
33698593 |
atataggagtacttgtttaatccaatatgtgattataaaattgaatagttattttcttgttaaacaagattatataataacatattttaattatgtctag |
33698494 |
T |
|
| Q |
317 |
gtaatgtaactatcttagctcaact |
341 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
33698493 |
gtaatgtaactatcttagctcaact |
33698469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 335
Target Start/End: Complemental strand, 33690170 - 33690000
Alignment:
| Q |
167 |
aaagtttactatatatgagaagtcttatgtcttcacaattattcccttaaa--tataggagtacttgtttaatccaatatgtgattataaaattgaatag |
264 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| || ||||||| |||| |||| ||||||| ||| ||||||| |||| ||||| ||||| | | |
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| T |
33690170 |
aaagtttgctatgtatgagaagtcttatgtcttcgcatgtattcccctaaatctatacaagtacttatttgatccaatgtgtgtttataccattgagtgg |
33690071 |
T |
|
| Q |
265 |
ttattttcttgttaaacaggattatataataacatatttgaattatgtctaggtaatgtaactatcttagc |
335 |
Q |
| |
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|||||| ||| |||| ||||| ||||| ||||| ||| || |||||| || ||||||||| |||||||| |
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| T |
33690070 |
ttatttcctttttaagcaggaatatatggtaacacattctaactatgtcaagataatgtaacaatcttagc |
33690000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 33669903 - 33669806
Alignment:
| Q |
18 |
acttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccactactacctacaaataatttatcactaaataacggtcccttat |
117 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| |||||||| |||||||||||| |||||||||| ||||| | | ||||||||||| ||||||||| |
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| T |
33669903 |
acttccactgctttctatatttcttttt--tatataagaaatcgacaaaccaatcaactactacctctaaatattgtcacactaaataactgtcccttat |
33669806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 33690274 - 33690159
Alignment:
| Q |
26 |
tactttcaatatttctttttcttatgtaagaaatggacaaaccaatccactactacctacaaataatttatcactaaataacggtcccttatcaatgcga |
125 |
Q |
| |
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||||||| |||||||||||| ||| ||||||||||||||| |||||||||| |||| ||||||||| |||||||||| | | ||||| || | ||| |
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| T |
33690274 |
tactttctatatttctttttagtat--aagaaatggacaaactaatccactaccacctctaaataatttcacactaaataatgct-ccttaacactacga |
33690178 |
T |
|
| Q |
126 |
ctattgtaaagtttactat |
144 |
Q |
| |
|
|||||||||||||| |||| |
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| T |
33690177 |
ctattgtaaagtttgctat |
33690159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 33669808 - 33669658
Alignment:
| Q |
180 |
tatgagaagtcttatgtcttcacaattattcccttaaatataggagtacttgtttaatccaatatgtgattataaaattgaatagttattttcttgttaa |
279 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||| |||||||||||||| ||| |||| ||||| ||||| |||| ||| | | || |
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| T |
33669808 |
tatgagaagtcttatgtcttcacatttattctccaaaatatacaagtacttgtttaatttaatgtgtgtttatatcattgagtagtcattaccctttt-- |
33669711 |
T |
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| Q |
280 |
acaggattatataataacatatttgaattatgtctaggtaatgtaactatctt |
332 |
Q |
| |
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|||| |||||||| ||||| ||| ||||||||| || ||||||||| ||||| |
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| T |
33669710 |
acagagttatataaaaacatcttttaattatgtccagataatgtaacaatctt |
33669658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 33678234 - 33678177
Alignment:
| Q |
18 |
acttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccacta |
77 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| |||||||| ||||||||||||||||| |
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|
| T |
33678234 |
acttccactgctttctatatttcttttt--tatataagaaatcgacaaaccaatccacta |
33678177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 33689937 - 33689873
Alignment:
| Q |
434 |
tgatttggtagtacttacttgtgttgaggaatnnnnnnnttaaagtgataaagaggttgaaaatt |
498 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||| |
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| T |
33689937 |
tgatttggtagtacttaattgtgttgtggaatttaaaaattatagtgataaagaggttgaaaatt |
33689873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 142; Significance: 4e-74; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 167 - 332
Target Start/End: Original strand, 82480 - 82645
Alignment:
| Q |
167 |
aaagtttactatatatgagaagtcttatgtcttcacaattattcccttaaatataggagtacttgtttaatccaatatgtgattataaaattgaatagtt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
82480 |
aaagtttactatatatgagaagtcttatgtcttcacaattattcccttaaatataggagtacttgtttaatccaatgtgtgtttataaaattgaatagtt |
82579 |
T |
|
| Q |
267 |
attttcttgttaaacaggattatataataacatatttgaattatgtctaggtaatgtaactatctt |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||||||| |
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|
| T |
82580 |
attttcttgttaaacaggattatataataacatattttagttatatccaggtaatgtaactatctt |
82645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 82369 - 82492
Alignment:
| Q |
18 |
acttccactactttcaatatttctttttcttatgtaagaaatggacaaaccaatccactactacctacaaataatttatcactaaataacggtcccttat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
82369 |
acttccactacttttaatatttcttttt--tatataagaaatggacaaaccaatccattactacctacaaataatttataactaaataacggtcccttat |
82466 |
T |
|
| Q |
118 |
caatgcgactattgtaaagtttactata |
145 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
82467 |
caat--gactattgtaaagtttactata |
82492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 574
Target Start/End: Original strand, 82650 - 82776
Alignment:
| Q |
445 |
tacttacttgtgttgaggaatnnnnnnnttaaagtgataaagaggttgaaaattcaatatttacatttcacacccttaacataatacttctaa----tag |
540 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||| || |
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|
| T |
82650 |
tacttacttgtgttgaggaattaaaaaattatagtgataaagagattgaaaattcgatatt-------cacaccctttacatagtacttctaacatctac |
82742 |
T |
|
| Q |
541 |
tattaaaaagatatatgtctggacatagtttaaa |
574 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
82743 |
tattaaaaagaaatatgtctggacatagtttaaa |
82776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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