View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_high_20 (Length: 271)
Name: NF17550_high_20
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 34828071 - 34827887
Alignment:
| Q |
67 |
gagtttagaataattatctttaacaaaaaccaggggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaact |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
34828071 |
gagtttagaataattatctttaacaaaaaccaggggcggagccacctcttagtgagggtgtgcacctgca-cccatgggattgtaaaatttcaaccaaca |
34827973 |
T |
|
| Q |
167 |
atctcagtttatttgcatttacacaccctgagaaatttattttgcaccagcatgttgtttcactttagggattttgcacttattcaattattcttctc |
264 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34827972 |
atctcagtttatttgcatttacac------------ttattttgcaccagcatgttgtttcactttagggattttgcacttatccaattattcttctc |
34827887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 8292367 - 8292249
Alignment:
| Q |
98 |
aggggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccctga |
197 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| ||| | ||||||||| |
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| T |
8292367 |
aggggcggagccacctcttagtgagggtgtgcacctgcaccccctgagattgtaaaatttcttccaattatcttagtttattcgcacctgcacaccctgg |
8292268 |
T |
|
| Q |
198 |
gaaatttattttgcaccag |
216 |
Q |
| |
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|||||| |||||||||||| |
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| T |
8292267 |
gaaattaattttgcaccag |
8292249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 9940062 - 9940169
Alignment:
| Q |
108 |
ccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccctgagaaatttatt |
207 |
Q |
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||||||| |||||| |||||||| |||||| ||||| ||| ||||||||||| ||| || || | |||||||| || |||||| ||| | | ||||||| |
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| T |
9940062 |
ccacctcatagtgagggtgtgcaactgcacaccctgaaattttaaaatttcaatcaattagcttaatttatttgtatctacacatcctcaaacatttatt |
9940161 |
T |
|
| Q |
208 |
ttgcacca |
215 |
Q |
| |
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|| ||||| |
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| T |
9940162 |
ttacacca |
9940169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 34828286 - 34828257
Alignment:
| Q |
49 |
tgattggattttgttagtgagtttagaata |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
34828286 |
tgattggattttgttagtgagtttagaata |
34828257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 101 - 264
Target Start/End: Original strand, 44826210 - 44826371
Alignment:
| Q |
101 |
ggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccctgagaa |
200 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |
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| T |
44826210 |
ggcggggccacctcttagtgagggtgtgcacctgcacccc-tgggattgtaaaatttcaaccaactatctcagtttatttgcatttgcacagcctcgaaa |
44826308 |
T |
|
| Q |
201 |
atttattttgcaccagcatgttgtttcactttagggattttgcacttattcaattattcttctc |
264 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
44826309 |
atttattttgcactagcttgttgtttcac-ttagggattttgcacttatccaattattcttctc |
44826371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 44582062 - 44582222
Alignment:
| Q |
96 |
ccaggggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccct |
195 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |||| ||||| |||||||| ||| | |||||||| |
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| T |
44582062 |
ccaggggcggagccacctcttagtgagggtgtgtacctgcaccccctgagattgtaaaatttcttccaattatcttagtttattcgcacctgcacaccct |
44582161 |
T |
|
| Q |
196 |
gagaaatttattttgcaccagcatgttgtttcactttagggattttgcacttattcaattatt |
258 |
Q |
| |
|
|||||| ||||||||||||| || ||||||| |||| ||||||||||||| ||| |||| |
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|
| T |
44582162 |
cggaaattaattttgcaccagc-tgcagtttcac-ttagctattttgcacttatccaaatatt |
44582222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 53517356 - 53517474
Alignment:
| Q |
96 |
ccaggggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccct |
195 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||| |||||||||| ||||| |||||||| || | |||||||| |
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| T |
53517356 |
ccaggggcggagccacctcttagtgagggtgtgcacctgcatcccctgaaattttaaattttcaaccaaatatcttgttttatttgtatctgcacaccct |
53517455 |
T |
|
| Q |
196 |
gagaaatttattttgcacc |
214 |
Q |
| |
|
| | |||||||||||||| |
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|
| T |
53517456 |
caaatatttattttgcacc |
53517474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 33887075 - 33886954
Alignment:
| Q |
94 |
aaccaggggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacacc |
193 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||| ||||| ||| ||||| | | |||||| |
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| T |
33887075 |
aaccaggggcggagccacctcatagtgagggtgtgcacctgcaccccctgaaatgttaaaatttcaaccaattatctttatttttttgcttctgcacacc |
33886976 |
T |
|
| Q |
194 |
ctgagaaatttattttgcacca |
215 |
Q |
| |
|
|| | | ||||||||||||||| |
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|
| T |
33886975 |
ctcaaatatttattttgcacca |
33886954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 7182528 - 7182401
Alignment:
| Q |
103 |
cggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccctgagaaat |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||| |
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|
| T |
7182528 |
cggagccacctcttagtgagggtgtgcacctgcaccccctgtgattgtaaaatttcaaccaactatataagtttatttgcatttgcacaccctgggaaat |
7182429 |
T |
|
| Q |
203 |
ttattttgcaccagcatgttgtttcactt |
231 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
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|
| T |
7182428 |
ttattttgcacca-catgttgtttcactt |
7182401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 47803606 - 47803491
Alignment:
| Q |
100 |
gggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcag-tttatttgcatttacacaccctgag |
198 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||| || ||| |||| |||||||||| ||||| | |||||||| || | |||||||| | |
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|
| T |
47803606 |
gggcggagccacctcttagtgaggctgtgcacctgcatcccttgaaattttaaattttcaaccaaatatctttgttttatttgtatctgcacaccctcaa |
47803507 |
T |
|
| Q |
199 |
aaatttattttgcacc |
214 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
47803506 |
atatttattttgcacc |
47803491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 21871637 - 21871478
Alignment:
| Q |
97 |
caggggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccctg |
196 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| ||| | ||||||||| |
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|
| T |
21871637 |
caggggcggagccacctcttagtgagggtgtgcacctgcaccccctgagattgtaaaatttcttccaattatcttagtttattcgcacctgcacaccctg |
21871538 |
T |
|
| Q |
197 |
agaaatttattttgcaccagcatgttgtttcactttagggattttgcacttattcaattatt |
258 |
Q |
| |
|
|||||| ||||||||||||| || ||||||| |||| ||||||||||||| ||| |||| |
|
|
| T |
21871537 |
ggaaattaattttgcaccagc-tgcagtttcac-ttagctattttgcacttatccaaatatt |
21871478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 28798026 - 28798140
Alignment:
| Q |
100 |
gggcggagccacctcttagtgaaggtgtgcacctgcaccccctgggattgtaaaatttcaaccaactatctcagtttatttgcatttacacaccctgaga |
199 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| ||| || ||| |||| |||||||||| ||||| | |||||||| || | |||||||| | | |
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|
| T |
28798026 |
gggcggagccacctcttagtgaggctgtgcacctgcatcccttgaaattttaaattttcaaccaaatatcttattttatttgtatctgcacaccctcaaa |
28798125 |
T |
|
| Q |
200 |
aatttattttgcacc |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28798126 |
tatttattttgcacc |
28798140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 12004713 - 12004671
Alignment:
| Q |
97 |
caggggcggagccacctcttagtgaaggtgtgcacctgcaccc |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
12004713 |
caggggcggagccacctcttagtgagggtgtgcacttgcaccc |
12004671 |
T |
|
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