View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17550_high_21 (Length: 271)

Name: NF17550_high_21
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17550_high_21
NF17550_high_21
[»] chr4 (8 HSPs)
chr4 (11-262)||(10395817-10396063)
chr4 (167-231)||(27272580-27272644)
chr4 (167-227)||(53469713-53469773)
chr4 (167-231)||(29235177-29235242)
chr4 (162-227)||(13816947-13817012)
chr4 (169-223)||(21206361-21206415)
chr4 (169-264)||(32015174-32015265)
chr4 (148-231)||(53472598-53472679)
[»] chr7 (4 HSPs)
chr7 (143-259)||(7961762-7961874)
chr7 (148-258)||(11269947-11270053)
chr7 (150-217)||(1103150-1103217)
chr7 (162-229)||(1716687-1716754)
[»] chr1 (5 HSPs)
chr1 (143-231)||(22827083-22827171)
chr1 (143-231)||(22840954-22841042)
chr1 (173-231)||(22826688-22826746)
chr1 (150-231)||(24284815-24284896)
chr1 (167-231)||(24272756-24272820)
[»] chr6 (12 HSPs)
chr6 (143-231)||(13558031-13558119)
chr6 (146-259)||(2921874-2921983)
chr6 (172-231)||(13556060-13556119)
chr6 (143-230)||(2923215-2923303)
chr6 (148-225)||(11678830-11678907)
chr6 (143-258)||(27340638-27340747)
chr6 (143-258)||(27401378-27401487)
chr6 (148-229)||(14721699-14721779)
chr6 (167-225)||(11677131-11677189)
chr6 (167-216)||(16403533-16403581)
chr6 (167-228)||(16910155-16910216)
chr6 (170-231)||(22880025-22880086)
[»] chr2 (5 HSPs)
chr2 (153-231)||(10128496-10128574)
chr2 (148-231)||(8761228-8761312)
chr2 (148-231)||(37965536-37965620)
chr2 (145-205)||(15140795-15140855)
chr2 (170-227)||(25550091-25550147)
[»] chr3 (3 HSPs)
chr3 (148-259)||(25889614-25889721)
chr3 (169-231)||(31141415-31141477)
chr3 (173-227)||(30046435-30046489)
[»] chr5 (4 HSPs)
chr5 (148-230)||(32796351-32796433)
chr5 (167-259)||(19670679-19670767)
chr5 (156-229)||(26896578-26896651)
chr5 (148-258)||(32795563-32795669)
[»] scaffold0007 (1 HSPs)
scaffold0007 (167-231)||(260221-260285)
[»] chr8 (1 HSPs)
chr8 (169-223)||(33897221-33897275)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 10395817 - 10396063
Alignment:
Q  11 cagagatggtgccatttctcttggtgaaatgtgtcatacattccttgagattcatgatgtgagcccttgttttgcttgcatacannnnnnnatagtttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||    
T  10395817 cagagatggtgccatttctcttggtgaaatgtgtcatacattccttgagattcatgatgtgagcccttgttttacttgcatacattttttgatagtttcc 10395916  T
Q  111 taagcttgtttgaaactgttgaaatatgtcttgaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttg 210  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||||||||||||||| | || |||||||||||||||||||    
T  10395917 taagcttgtttgaaactgtt-aaatatgtcttgaattatgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttg 10396015  T
Q  211 tgtgttagtatttcttgcacccatatatagttagtgggttatgctatagatg 262  Q
    |||||||||||||||||    |||  ||||||||||||||||||||||||||    
T  10396016 tgtgttagtatttcttg----catcaatagttagtgggttatgctatagatg 10396063  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 27272580 - 27272644
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  27272580 atgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 27272644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 53469773 - 53469713
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  53469773 atgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttg 53469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 29235242 - 29235177
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagt-atttcttgcacc 231  Q
    ||||| ||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  29235242 atgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcacc 29235177  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 13816947 - 13817012
Alignment:
Q  162 agaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    |||| |||||||||||||| |||| |||||||||||||||||  |||| ||||||| |||||||||    
T  13816947 agaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttattatttcttg 13817012  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 21206361 - 21206415
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtattt 223  Q
    |||||||||| |||||  ||||||||||||||||||||| ||||| |||||||||    
T  21206361 gaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattt 21206415  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 32015174 - 32015265
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgggttatgctatagatgat 264  Q
    ||||| ||||||||||| ||||  | ||||||||| |  ||||||||||||||||||||||||     |||||||||||||| |||||||| ||||    
T  32015174 gaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcacc----aatagttagtgggttttgctatagctgat 32015265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 53472679 - 53472598
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||| |||||| ||| || | ||||||||||||||||| |||  ||||||||||||||  ||||||||||||||||| ||||||    
T  53472679 atgttccacatcggataatacgaagaaatatgcaaagacttgc-catataaataaaagt-ttgtgtgttagtatttcatgcacc 53472598  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 7961762 - 7961874
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 242  Q
    |||||||||||||||| | | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  7961762 gaattatgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcacc----aatagtt 7961857  T
Q  243 agtgggttatgctatag 259  Q
    |||||||| ||||||||    
T  7961858 agtgggttttgctatag 7961874  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 11269947 - 11270053
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 247  Q
    ||||||||||| ||| || ||||||||||||  |||  |||||||||||||||||||||||||||||||||||||  |||||||     |||||||||||    
T  11269947 atgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcacc----aatagttagtgg 11270042  T
Q  248 gttatgctata 258  Q
    ||| |||||||    
T  11270043 gttttgctata 11270053  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 1103150 - 1103217
Alignment:
Q  150 gtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgtta 217  Q
    ||||||||| ||| || ||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  1103150 gtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtta 1103217  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1716754 - 1716687
Alignment:
Q  162 agaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 229  Q
    |||| ||||| ||||||| ||||| |||  |||||||||||| | ||||||||||| |||||||||||    
T  1716754 agaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgca 1716687  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 22827171 - 22827083
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  22827171 gaattatgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcacc 22827083  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 22840954 - 22841042
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||| ||| || ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  22840954 gaattatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcacc 22841042  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 22826746 - 22826688
Alignment:
Q  173 aaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||| |||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcacc 22826688  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 24284815 - 24284896
Alignment:
Q  150 gtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||  ||||| ||||| ||||||||||| ||||||  ||||||||||| || |||||||||| |||||||||||||    
T  24284815 gtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcacc 24284896  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 24272756 - 24272820
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    ||||||||||||||||||| |||   ||||| ||||| |||||||||||||||||||||||||||    
T  24272756 atgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcacc 24272820  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 13558119 - 13558031
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||    
T  13558119 gaattatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcacc 13558031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 2921983 - 2921874
Alignment:
Q  146 ttatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagt 245  Q
    ||||||| ||||| ||| || |||||||||||||||| || ||||| ||||||||||||| ||| |||||||||||||||||||||     |||||||||    
T  2921983 ttatgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcacc----aatagttagt 2921888  T
Q  246 gggttatgctatag 259  Q
    ||||| ||||||||    
T  2921887 gggttttgctatag 2921874  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 13556119 - 13556060
Alignment:
Q  172 gaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 13556060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 2923303 - 2923215
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaa-gatttggtcatataaataaaagccttgtgtgttagtatttcttgcac 230  Q
    ||||||| |||||||| ||| || ||||||||||||||||| |  ||||||||||||||||||| |||||||||||||| |||||||||    
T  2923303 gaattatttcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcac 2923215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 11678830 - 11678907
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttct 225  Q
    ||||||||||| ||| || ||||||||||||||||||  |||||||| |||||||||  |||||||||||||||||||    
T  11678830 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttct 11678907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 27340747 - 27340638
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 242  Q
    |||| ||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||| |  ||||||||||||| ||||| |||     ||||||    
T  27340747 gaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtacc----aatagtt 27340654  T
Q  243 agtgggttatgctata 258  Q
    |||||||| |||||||    
T  27340653 agtgggttttgctata 27340638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 27401487 - 27401378
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 242  Q
    |||| ||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||| |  ||||||||||||| ||||| |||     ||||||    
T  27401487 gaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtacc----aatagtt 27401394  T
Q  243 agtgggttatgctata 258  Q
    |||||||| |||||||    
T  27401393 agtgggttttgctata 27401378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 14721699 - 14721779
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 229  Q
    ||||||||||| |||||| |  ||||||||||||||||||||| | |||||||||||||||||| | | |||||||||||||    
T  14721699 atgtcccacatcggagaatagaaagaaatatgcaaagatttgg-cctataaataaaagccttgtttataagtatttcttgca 14721779  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 11677131 - 11677189
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttct 225  Q
    ||||||||||||||||||  ||| ||||||||||||||  |||||||||||||||||||    
T  11677131 atgaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttct 11677189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 16403533 - 16403581
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgtt 216  Q
    |||||||||||||||| || || |||||||||||||||| ||||||||||    
T  16403533 atgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtt 16403581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 16910216 - 16910155
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgc 228  Q
    |||||| |||||||||||| ||||   ||||||||||||  |||||||||||||||| ||||    
T  16910216 atgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgc 16910155  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 22880086 - 22880025
Alignment:
Q  170 aagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||  ||| | ||||||||||||||||| |  |||||||||| |||||||||||||    
T  22880086 aagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttgcacc 22880025  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 10128496 - 10128574
Alignment:
Q  153 ccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||| |||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  10128496 ccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 10128574  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 8761312 - 8761228
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaaga-tttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||  || || ||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  8761312 atgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 8761228  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 37965620 - 37965536
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaag-ccttgtgtgttagtatttcttgcacc 231  Q
    ||||| ||||| ||| || ||||||||||||||||||| ||||  ||||||||||||| | ||||||||||||||||||||||||    
T  37965620 atgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcacc 37965536  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 15140795 - 15140855
Alignment:
Q  145 attatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaag 205  Q
    |||||||||||||| ||  || ||||||||||||| |||||||||||||||||||||||||    
T  15140795 attatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaag 15140855  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 25550091 - 25550147
Alignment:
Q  170 aagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    |||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtg-tagtatttcttg 25550147  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 25889614 - 25889721
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 247  Q
    ||||||||||| ||| || |||||||  ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||     |||||||||||    
T  25889614 atgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcacc----aatagttagtgg 25889709  T
Q  248 gttatgctatag 259  Q
    ||| ||||||||    
T  25889710 gttttgctatag 25889721  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 31141415 - 31141477
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||    
T  31141415 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacacc 31141477  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 30046435 - 30046489
Alignment:
Q  173 aaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    ||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttg 30046489  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 32796433 - 32796351
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcac 230  Q
    |||||||| || ||| || ||||||||||||||||||  || ||||||||||||||||||||||||||||||||| |||||||    
T  32796433 atgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcac 32796351  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 19670679 - 19670767
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgggttatgctatag 259  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||| |||| |||     |||||||||||||| ||||||||    
T  19670679 atgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtacc----aatagttagtgggttttgctatag 19670767  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 26896578 - 26896651
Alignment:
Q  156 cattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 229  Q
    |||||||||| | ||||||||||||||||| |||| ||||||||||||  | ||||||||||||||||||||||    
T  26896578 cattggagaataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 32795669 - 32795563
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 247  Q
    ||||||||||| ||| || ||||||||||||||||||| || ||||||| |||||||| |||| |||| |||||| |||| |||     |||||||||||    
T  32795669 atgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtacc----aatagttagtgg 32795574  T
Q  248 gttatgctata 258  Q
    ||| |||||||    
T  32795573 gttttgctata 32795563  T

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Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 260285 - 260221
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||    
T  260285 atgaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcacc 260221  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 33897221 - 33897275
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtattt 223  Q
    ||||||||||| |||||||||   ||||||||||||| |||||||||||||||||    
T  33897221 gaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattt 33897275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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