View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_high_22 (Length: 250)
Name: NF17550_high_22
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 15156780 - 15156938
Alignment:
| Q |
10 |
aatattgacagtacacacttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttt |
109 |
Q |
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|||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
15156780 |
aatattcacagtacacactcacaaggtttcaagagccttgtgtctctcctttcctaatgaaccacacaataattctaagataactattaagtctgacttt |
15156879 |
T |
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| Q |
110 |
tctttatttatataacagaatacacacattc-tagaaaataactgcacacaatataatt |
167 |
Q |
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| T |
15156880 |
tctttatttatataacagaatacacacattcttagaaaataacagcacacaatataatt |
15156938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 19808663 - 19808513
Alignment:
| Q |
10 |
aatattgacagtacacacttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttt |
109 |
Q |
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| T |
19808663 |
aatattcacagtacacactcacaaggttccgagagccttgtgtctctccttttccaatgaaccacacaataattctaagataactattaagtctgactat |
19808564 |
T |
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| Q |
110 |
tctttatttatataacagaatacacacattctagaaaataactgcacacaata |
162 |
Q |
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| T |
19808563 |
tctttatttatataacagaata--cacattctagaaaataactgcacacaata |
19808513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 19808684 - 19808727
Alignment:
| Q |
192 |
tacaagtctgtgattgtatatttatctctgattagggaaccttt |
235 |
Q |
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| T |
19808684 |
tacaagtgtgtgattgtatatttatctctgattaggaaaccttt |
19808727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 25555749 - 25555600
Alignment:
| Q |
10 |
aatattgacagtacacacttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttt |
109 |
Q |
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| T |
25555749 |
aatattcacagtacacactcacaaggtttcaagatccttgtgtctctcctttcctaatgagccacacaatgattct--------tattaagtctgacttt |
25555658 |
T |
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| Q |
110 |
tctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt |
167 |
Q |
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| T |
25555657 |
tctttatttatataacagaatacacacattctataaaataacagcacacaatataatt |
25555600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 25549376 - 25549303
Alignment:
| Q |
94 |
tattaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt |
167 |
Q |
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| T |
25549376 |
tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaatataatt |
25549303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 20011080 - 20011229
Alignment:
| Q |
10 |
aatattgacagtacacacttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttt |
109 |
Q |
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|||||| |||||||||||| |||||||||||| |||||||||||| |||||| ||||||| ||||||||| ||||| |||||| | ||||||| |
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| T |
20011080 |
aatattcacagtacacactcacaaggtttcaagagccttgtgtctttcctttcctaatgagccacacaatgattct--------tattaagtctgacttt |
20011171 |
T |
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| Q |
110 |
tctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt |
167 |
Q |
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| T |
20011172 |
tctttatttatataacagaatacacacattctataaaataacagcacacaatataatt |
20011229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 22621193 - 22621342
Alignment:
| Q |
10 |
aatattgacagtacacacttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttt |
109 |
Q |
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|||||| |||||||| ||| |||||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||| |||||| | ||||||| |
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| T |
22621193 |
aatattcacagtacatactcacaaggtttcaagaaccttgtgtctctcctttcctaatgagccacacaatgattct--------tattaagtctgacttt |
22621284 |
T |
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| Q |
110 |
tctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt |
167 |
Q |
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| T |
22621285 |
tctttatttatataacagaatacacacattctataaaataacagcacacaatataatt |
22621342 |
T |
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