View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17550_high_6 (Length: 484)
Name: NF17550_high_6
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 2243145 - 2242692
Alignment:
| Q |
13 |
agcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaag |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2243145 |
agcacaaataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaactttttttaaatattttctctgaactttcatccttcaaag |
2243046 |
T |
|
| Q |
113 |
tctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaaaccaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2243045 |
tctaaggattgctaagttatttcaacttatctagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaaaccaaa |
2242946 |
T |
|
| Q |
213 |
caccaaaaatttcatcctttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccccaaatt |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2242945 |
caccaaaaatttcatcccttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccccaaatt |
2242846 |
T |
|
| Q |
313 |
cgaaacaaacagaacaatcgaatcagccgcaaataagcaacgtactcttattaaagtccctaataaaagtggtcagctatactgtttagagaagtttaca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2242845 |
cgaaacaaacagaacaatcgaatcagccgcaaataagcaacgtactcttattacagtccctaataaaagtggtcagctatactgtttagagaagtttaca |
2242746 |
T |
|
| Q |
413 |
ttgtaggttgagatttaatccaatatgtcaagaaaagccagctagtgtctttag |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2242745 |
ttgtaggttgagatttaatccaatatgtcaagaaaagccagctagtgtctttag |
2242692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 31780352 - 31780117
Alignment:
| Q |
13 |
agcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaag |
112 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31780352 |
agcacaaataaggaaaaaca-aaaaaggttaaaggaatttatgaagtacatacatagaaactttttttaaatattttctctgaactttcatccttcaaag |
31780254 |
T |
|
| Q |
113 |
tctaaggattgctaag----ttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactg------tcatttggaatcaca-tcttggca |
201 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||| | |||| ||||||||||| | |||||||||||||| | ||||||||||||| |||| || |
|
|
| T |
31780253 |
tctaaggattgccaagttatttatttccacttacctagag-aaagtaacatgtctacaatttcttcactgtgtcattaatttggaatcacagtcttcaca |
31780155 |
T |
|
| Q |
202 |
tacaaaccaaacaccaaaaatttcatcctttgccaatc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31780154 |
tacaaaccaaacaccaaaaatttcatcccttgccaatc |
31780117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 29057292 - 29057137
Alignment:
| Q |
86 |
ttttctctgaactttcatccttcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttg |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||| ||||||||| ||| | || | || |
|
|
| T |
29057292 |
ttttctctgaattttcatccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctg |
29057193 |
T |
|
| Q |
186 |
gaatcaca-tcttggcatacaaaccaaacaccaaaaatttcatcctttgccaatcc |
240 |
Q |
| |
|
||||||| |||| |||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
29057192 |
caatcacagtcttcacatagaaatcaaacaccaaaaatttcatcccttgccaatcc |
29057137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 29056898 - 29056806
Alignment:
| Q |
253 |
tccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccccaaattcgaaacaaacagaacaatcgaatcagccgcaaa |
345 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||| |||||||||||||||| | || ||| |||||||||||| ||| |||||||||| |
|
|
| T |
29056898 |
tccaactcccattactgcaccaactagcgtatgtgtccccgatatcggtagccctagctttgaagcaaacagaacaactgaagcagccgcaaa |
29056806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University