View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_high_9 (Length: 422)
Name: NF17550_high_9
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 28937854 - 28938257
Alignment:
| Q |
1 |
gaggggcaaggggcaagaggcaagggagcagagtgattcaatgacatacattttgactagtaatttacaatagtaccaccattattaactcgagtcctga |
100 |
Q |
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| T |
28937854 |
gaggggcaaggggcaagaggcaagggagcagagtgattcaatgacatacattttgactagtaatttacaatagtaccgccattattaactcgagtcctga |
28937953 |
T |
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| Q |
101 |
cctcatgcacttcaactgacttgtagatatgtggacaagaacattcaacaaaaatacagattcaagcaagacaaacaacacatgtgttctacattattga |
200 |
Q |
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| T |
28937954 |
cctcatgcacttcaactgacttgtagatatgtggacaagaacattcaacaaaaatacagattcaaacaagacaaacaacacatgtgttctacattattga |
28938053 |
T |
|
| Q |
201 |
acaactcaatcaaacaataaaggaccacaaccttaaacacatgaaataatatgcaagtggaccacagcacaataaagactctcaatctctcaggaaacat |
300 |
Q |
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| T |
28938054 |
acaactcaatcaaacaataaaggaccacaaccttaaacacatgaaataatatgcaagtggaccacagcacaataaagactctcaatctctcaggaaacat |
28938153 |
T |
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| Q |
301 |
gcaggaaagaaggtgggtgcgacaactttacccaaacat-aattatacctagcacaatattttgggtcgtcttgtcgaaaccagtgttttccaccacttc |
399 |
Q |
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| T |
28938154 |
gcaggaaagaaggtgggtgcgacaactttacccaaacataaattatacattgcacaatattttgggtcgtcttgtagaaaccagtgttttccaccacttc |
28938253 |
T |
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| Q |
400 |
catt |
403 |
Q |
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|||| |
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| T |
28938254 |
catt |
28938257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 28938256 - 28938288
Alignment:
| Q |
371 |
ttgtcgaaaccagtgttttccaccacttccatt |
403 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
28938256 |
ttgtggaaaccagtgttttccaccacttccatt |
28938288 |
T |
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