View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_1 (Length: 712)
Name: NF17550_low_1
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 26 - 699
Target Start/End: Complemental strand, 36413056 - 36412375
Alignment:
| Q |
26 |
ttaattttgatttactaccatac-----ttatatcattgtcatttgtaatcgtt---------ctaagtgaaacttatgtattaagcaacatcatatggt |
111 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36413056 |
ttaattttgatttactaccatacatagattaaatcattgtcatttgtaatcgttgctgagtttctaagtgaaacttatgtattaagcaacatcatatggt |
36412957 |
T |
|
| Q |
112 |
aggctcaatcagaatcagaaacaatccatgtcttcatctcttacaacaatggcaaaacctaaccatgaaacaaacaaaacaaatccacgctcatgccatc |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412956 |
aggctcaatcagaa------acaatccatgtcttcatctcttacaacaatggcaaaacctaaccatgaaacaaacaaaacaaatccacgctcatgccatc |
36412863 |
T |
|
| Q |
212 |
accaacaacctcactcgtttctcctacatttccagcagaatcctagcattcttcgctctctcaccacgcggcgattttcgctatgcagaaactcttttca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412862 |
accaacaacctcactcgtttctcctacatttccagcagaatcctagcattcttcgctctctcaccacgcggcgattttcgctatgcagaaactcttttca |
36412763 |
T |
|
| Q |
312 |
cagacatgcccaatccaaatatcttcgattacaactccataatcacttcttacacaacaaactcacaattccataaattattcttcgttttcaccaaaat |
411 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412762 |
cacacattcccaatccaaatatcttcgattacaactccataatcacttcttacacaacaaactcacaattccataaattattcttcgttttcaccaaaat |
36412663 |
T |
|
| Q |
412 |
gcttaacaccaacattcgccccaattctcataccttcaccacgctggtaaaagcatgcgtttctctttcttctctcgaacaagttttcactctatccatg |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412662 |
gcttaacaccaacattcgccccaattctcataccttcaccacgctggtaaaagcatgcgtttctctttcttctctcgaacaagttttcactctatccatg |
36412563 |
T |
|
| Q |
512 |
aagttggggaattcatctgacgtgtatttcgtgagttctgttatcaatgcgttttcaaaacacagtgccatacaccttgcacgtcaagtgtttgacgaat |
611 |
Q |
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| T |
36412562 |
aagttggggaattcatctgacgtgtatttcgtgagttctgttatcaatgcgttttcaaaacacagtgccatacaccttgcacgtcaagtgtttgacgaat |
36412463 |
T |
|
| Q |
612 |
gttctaacagaaatgttgtttgttggacaagtctcgtcagtggatattgtagttgcggtttggttaatgaagcgagggatgtttttga |
699 |
Q |
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| T |
36412462 |
gttctaacagaaatgttgtttgttggacaagtctcgtcagtggatattgtagttgcggtttggttaatgaagcgagggatgtttttga |
36412375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 124 - 699
Target Start/End: Complemental strand, 52097442 - 52096867
Alignment:
| Q |
124 |
aatcagaaacaatccatgtcttcatctcttacaacaatggcaaaacctaaccatgaaacaaacaaaacaaatccacgctcatgccatcaccaacaacctc |
223 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
52097442 |
aatcagaaacagtccatgtcttcatctcttacaacaatggcaaaacctaaccatgaaacaaacaaaacaaatccacgctcatgctattgccaacaacctc |
52097343 |
T |
|
| Q |
224 |
actcgtttctcctacatttccagcagaatcctagcattcttcgctctctcaccacgcggcgattttcgctatgcagaaactcttttcacagacatgccca |
323 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
52097342 |
actcgtttctcctacatctccagcagaatcctagcattctttgctgcctcaccgcgtggcgattttcgctatgcagaaactctcttcacacacatgccca |
52097243 |
T |
|
| Q |
324 |
atccaaatatcttcgattacaactccataatcacttcttacacaacaaactcacaattccataaattattcttcgttttcaccaaaatgcttaacaccaa |
423 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| | ||| ||||||||||||||||| |||| || |
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| T |
52097242 |
atccaaatatattcgattacaactctataatcacttcatacacaacaaactcacaattcgataaatcactctctgttttcaccaaaatgctcaacatgaa |
52097143 |
T |
|
| Q |
424 |
cattcgccccaattctcataccttcaccacgctggtaaaagcatgcgtttctctttcttctctcgaacaagttttcactctatccatgaagttggggaat |
523 |
Q |
| |
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|||||||||||||||||| ||||||||||| || |||||| |||||||| ||||||| ||||| |||||||| ||||||||| | ||||||| ||||||| |
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| T |
52097142 |
cattcgccccaattctcacaccttcaccactcttgtaaaatcatgcgttactctttcctctcttgaacaagtcttcactctaacgatgaagtcggggaat |
52097043 |
T |
|
| Q |
524 |
tcatctgacgtgtatttcgtgagttctgttatcaatgcgttttcaaaacacagtgccatacaccttgcacgtcaagtgtttgacgaatgttctaacagaa |
623 |
Q |
| |
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|||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
52097042 |
tcatctgatgtgtattttgtgagctctgttatcaatgtgttttcaaaacacggtgccatacaccttgcacgtcaagtgtttgatgaaagttctaacagaa |
52096943 |
T |
|
| Q |
624 |
atgttgtttgttggacaagtctcgtcagtggatattgtagttgcggtttggttaatgaagcgagggatgtttttga |
699 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
52096942 |
atgttgtttgttggacgagtctcgtgagtggatattgtagttgtggtttggttaatgaagtgagggatgtgtttga |
52096867 |
T |
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