View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_10 (Length: 459)
Name: NF17550_low_10
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 26837572 - 26838014
Alignment:
| Q |
1 |
caaaccaaacatagaatgaaaatagtaactgtcgcacttgctatctttttgacatataaaagctaatgagttctaaggacagtatagataaaaggcaata |
100 |
Q |
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| T |
26837572 |
caaaccaaacatagaatgaaaatagtaactgtcgcacttgctatctttttgacatataaaagctaatgagttctaaggacagtatagataaaaggcaaca |
26837671 |
T |
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| Q |
101 |
ttaactgttattagagcacagtgtgtctactgacaaattaaattattacaggttaaataaaaagcagtggtgaaaaacagactcacttgtcttagttgtg |
200 |
Q |
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| T |
26837672 |
ttaactgttattagagcacagtgtgtctactgacaaattaaattattacaggttaaacaaaaagcagtggtgaaaaacagactcacttgtcttagttgtg |
26837771 |
T |
|
| Q |
201 |
cactaacttcagcaaggaaaccttcatccagctgtcctgcttgttccctttgatttatttcctaatgattatgatgaattttttaaatagttagacaaga |
300 |
Q |
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| T |
26837772 |
cactaacttcagcaaggaaaccttcatccagctgtcctgcttgttccctttgatttatttcctaatgattatgatgaattttttaaatagttagacaaga |
26837871 |
T |
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| Q |
301 |
tttgctgaaaatatatgtt-aaggtcataacaacccattggcaaaaataaattatcaaaataaaagctggccatttagaagtgaagaaagattatatata |
399 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26837872 |
tttgctgaaaatatatgttaaaggtcataacaacccattggcaaaaataaattatcaaaataaaagctggccatttagaagtgaagaaagattatatata |
26837971 |
T |
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| Q |
400 |
taaatttgtggttgcagagagccaatcaccttccatcacaaat |
442 |
Q |
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| T |
26837972 |
taaatttgtggttgcagagagccaatcaccttccatcacaaat |
26838014 |
T |
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