View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17550_low_13 (Length: 423)

Name: NF17550_low_13
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17550_low_13
NF17550_low_13
[»] chr4 (1 HSPs)
chr4 (1-405)||(30961341-30961745)
[»] chr5 (3 HSPs)
chr5 (173-382)||(38784324-38784538)
chr5 (240-382)||(38741988-38742132)
chr5 (64-282)||(38790437-38790667)
[»] chr7 (1 HSPs)
chr7 (225-277)||(34081577-34081629)


Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 30961745 - 30961341
Alignment:
Q  1 atgactaatcttcaaagagaagcacaaaggaagattaagaggattagtgaagagtaaaggaataattacttttgttgaagagagggtaatgtgaaggcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30961745 atgactaatcttcaaagagaagcacaaaggaagattaagaggattagtgaagattaaaggaataattacttttgttgaagagagggtaatgtgaaggcat 30961646  T
Q  101 caacctctaatcaaaaggactatgagaaggaagaggatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatataat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30961645 caacctctaatcaaaaggactatgagaaggaagaggatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatataat 30961546  T
Q  201 caagaaaggatagggaagaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaagggaaggttgatctagaaacatgcttacattgaga 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30961545 caagaaaggatagggaggaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaaaggaaggttgatctagaaacatgcttacattgaga 30961446  T
Q  301 gcaataagtggaacaaaatttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaacttttgagttcacaaattatgccatattacagtgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30961445 gcaataagtggaacaaaatttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaacttttgagttcacaaattatgccatattacagtgg 30961346  T
Q  401 gatca 405  Q
    |||||    
T  30961345 gatca 30961341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 382
Target Start/End: Original strand, 38784324 - 38784538
Alignment:
Q  173 atggaggaagacttagaaattatataatcaagaaagga----tagggaagaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaaggg 268  Q
    |||||||||||||||||||  || ||||||| ||||||    ||| || ||| |||||||||||||||| |||||| || |||||||||| ||||||||     
T  38784324 atggaggaagacttagaaac-atgtaatcaacaaaggaggattagagaggaagaataactttggaagaacaagaaatttaaaattcctaaattttaagga 38784422  T
Q  269 aaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagttaggggaggaaaggaaagtgaagttagcaa 365  Q
    |||||||||||  |||||||| |||| ||| ||||| | || ||||||||| |||||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  38784423 aaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaattta-gggaggaatggaaagtgaagttagcaa 38784521  T
Q  366 cttttgagttcacaaat 382  Q
    ||||  |||||||||||    
T  38784522 ctttgaagttcacaaat 38784538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 38742132 - 38741988
Alignment:
Q  240 agaaacttgaaattcctaatttttaagggaaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagtt 336  Q
    ||||||||||||||| ||||||||||||||| |||||| |  |||||||| |||| ||| ||||| | |||||||||||| |||||||||||| ||||||    
T  38742132 agaaacttgaaattcttaatttttaagggaatgttgatttagagaaacatacttaaattcagagctaaaagtggaacaaatatttagttaccatgaagtt 38742033  T
Q  337 aggggaggaaaggaaagtgaagttagcaacttttgagttcacaaat 382  Q
    | |||| ||| ||||||||||||||||||||||  |||||||||||    
T  38742032 a-gggaagaatggaaagtgaagttagcaactttgaagttcacaaat 38741988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 282
Target Start/End: Original strand, 38790437 - 38790667
Alignment:
Q  64 aattacttttgttgaagagagggtaatgtgaaggcatcaacctctaa-tcaaaaggactat--gagaaggaagaggatgaggctcctagggagtatagga 160  Q
    ||||||||| ||| |||| |||||||||||||| |||||||||| || |||||||||||||  ||| ||||||| |||||| |||| |||||||||  ||    
T  38790437 aattactttggttaaagaaagggtaatgtgaagtcatcaacctccaagtcaaaaggactatatgaggaggaagatgatgagactccaagggagtat--ga 38790534  T
Q  161 gtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggat-------------agggaagaaaaataactttggaagaaaaagaaactt 247  Q
    |   ||||||  || ||| |||||||| |||  || |||||||||||||||             ||||| ||| ||||||||||||||||||||||||||    
T  38790535 ggcataggagacattgagaaagacttaaaaac-atgtaatcaagaaaggatgattagggtctctagggaggaagaataactttggaagaaaaagaaactt 38790633  T
Q  248 gaaattcctaatttttaagggaaggttgatctaga 282  Q
     |||||||| | |||||||||||||||||| ||||    
T  38790634 -aaattccttacttttaagggaaggttgatataga 38790667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 34081577 - 34081629
Alignment:
Q  225 aactttggaagaaaaagaaacttgaaattcctaatttttaagggaaggttgat 277  Q
    ||||||||||||||||||||||| |||||||||||||  || |||||||||||    
T  34081577 aactttggaagaaaaagaaacttaaaattcctaatttccaaaggaaggttgat 34081629  T

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