View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_15 (Length: 410)
Name: NF17550_low_15
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Original strand, 51354573 - 51354963
Alignment:
| Q |
11 |
gcagagagaagcagaggaaagaagctggaaggttacaagctgtgaacaggaagttaacagcaatgaacaaactgcttatggaggaaaatgatagattgca |
110 |
Q |
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| T |
51354573 |
gcagagagaagcagaggaaagaagctggaaggttacaagctgtgaacaggaagttaacagcaatgaacaaactgcttatggaggaaaatgatagattgca |
51354672 |
T |
|
| Q |
111 |
gaaacaagtgtcacaccttgtctatgagaacacgtttttccgccaacatacacaaaatgtaattatcatcctattcttcctttctat------------a |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
51354673 |
gaaacaagtgtcacaccttgtctatgagaacacgtttttccgccaacatacacaaaatgtaattatcatcctattcttcctttatttaaacattaagtaa |
51354772 |
T |
|
| Q |
199 |
gctttctcatttgagtctggtcaagttgcctaaaatcattattttaagcatctattcaaaaaagaaaattgtcatatgatatctgagttgagattgaatt |
298 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51354773 |
attttgtcatttgagtctggtcaagttgcctaaaatcattattttaagcatctatgcaaaaaagaaaattgtcatatgatatctgagttgagattgaatt |
51354872 |
T |
|
| Q |
299 |
gaacagacgacccttgccactacggacacgagttgtgagtcagtggtaacaagcggtcagcagcatccacaaccaagggatgcaagccctg |
389 |
Q |
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| T |
51354873 |
gaacagacgacccttgccactacagacacgagttgtgagtcagtggtaacaagcggtcagcagcatccacaaccaagggatgcaagccctg |
51354963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 4336978 - 4337105
Alignment:
| Q |
13 |
agagagaagcagaggaaagaagctggaaggttacaagctgtgaacaggaagttaacagcaatgaacaaactgcttatggaggaaaatgatagattgcaga |
112 |
Q |
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|||||||||||||| ||||| || ||||| |||| |||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||||| |
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| T |
4336978 |
agagagaagcagagaaaagagtctttcaggttgcaaggtgtgaataggaagttgacagccatgaataagctgctgatggaggaaaatgataggttgcaga |
4337077 |
T |
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| Q |
113 |
aacaagtgtcacaccttgtctatgagaa |
140 |
Q |
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| || ||||| ||||| || |||||||| |
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| T |
4337078 |
agcaggtgtctcacctggtgtatgagaa |
4337105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 21743503 - 21743376
Alignment:
| Q |
13 |
agagagaagcagaggaaagaagctggaaggttacaagctgtgaacaggaagttaacagcaatgaacaaactgcttatggaggaaaatgatagattgcaga |
112 |
Q |
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|||||||||||||| ||||| ||| |||| | ||| ||||||| ||||| || | ||||||||||| || | ||||||||||||||||| ||||||| |
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| T |
21743503 |
agagagaagcagagaaaagaggcttcaaggcttcaaactgtgaataggaaattgtctgcaatgaacaagttgttgatggaggaaaatgataggttgcaga |
21743404 |
T |
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| Q |
113 |
aacaagtgtcacaccttgtctatgagaa |
140 |
Q |
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||||||||||||| ||||| | |||||| |
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| T |
21743403 |
aacaagtgtcacagcttgtgtgtgagaa |
21743376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 43510960 - 43510857
Alignment:
| Q |
16 |
gagaagcagaggaaagaagctggaaggttacaagctgtgaacaggaagttaacagcaatgaacaaactgcttatggaggaaaatgatagattgcagaaac |
115 |
Q |
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||||||||||| ||||| ||| |||||| ||||||||||| |||||||| | || ||||| || ||||| ||||| || |||||||| |||||||||| |
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| T |
43510960 |
gagaagcagagaaaagaggcttcaaggttgcaagctgtgaataggaagttgagtgctatgaataagctgctgatggaagagaatgataggttgcagaaac |
43510861 |
T |
|
| Q |
116 |
aagt |
119 |
Q |
| |
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|||| |
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|
| T |
43510860 |
aagt |
43510857 |
T |
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