View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_23 (Length: 278)
Name: NF17550_low_23
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 2014574 - 2014323
Alignment:
| Q |
10 |
attattcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagc |
109 |
Q |
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| T |
2014574 |
attattcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagc |
2014475 |
T |
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| Q |
110 |
atatatataggttcaatttttgtttctctttataactatttgtcatcttcagcactcacattcaaacaaaaactaatacttgtttccaga--agagnnnn |
207 |
Q |
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| T |
2014474 |
atatatataggttcaatttttgtttctctttataactatttgttatcttcagcactcacattcaaacaaaaactaatacttgtttccagaagagagaaaa |
2014375 |
T |
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| Q |
208 |
nnncacacaaatttagacatcatcatgtacaacctagtttcaacacaacaag |
259 |
Q |
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| T |
2014374 |
aaacacacaaatttagacatcatcatgtacaacctagtttcaacacaacaag |
2014323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 40569177 - 40569243
Alignment:
| Q |
13 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
79 |
Q |
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| T |
40569177 |
attcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattggttga |
40569243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 40573778 - 40573844
Alignment:
| Q |
13 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
79 |
Q |
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|||||| |||||| || ||| ||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
40573778 |
attcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttga |
40573844 |
T |
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