View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_24 (Length: 272)
Name: NF17550_low_24
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 41011485 - 41011243
Alignment:
| Q |
12 |
agcagagaggggataatggtgagtcccattattgtactgaagggaatgactgctaatgctcctttgcatcaagattggagtacttggtgaaggtgatcca |
111 |
Q |
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| T |
41011485 |
agcagagaggggataatggtgagtcccattattgtactgaagggaatgactgctaatgctcctttgcatcaagattggagtacttggtgaaggtgatcca |
41011386 |
T |
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| Q |
112 |
ccatagctgctatagccactgctcaactcagagttattcagttgggagagagtgtcttggaatgagtctaactcagtgaaatcagggatggagttgtttt |
211 |
Q |
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| T |
41011385 |
ccatagctgctatagccactgctcaactcagagttattcagttgggagagagtgtcttggaatgagtctaactcagtgaaatcagggatggagttgtttt |
41011286 |
T |
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| Q |
212 |
gttccataaatggagaagaagagtgaagaagaaagggtgttga |
254 |
Q |
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| T |
41011285 |
gttccataaatggagaagaagagtgaagaagaaagggtgttga |
41011243 |
T |
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