View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17550_low_26 (Length: 271)

Name: NF17550_low_26
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17550_low_26
NF17550_low_26
[»] chr4 (8 HSPs)
chr4 (11-262)||(10395817-10396063)
chr4 (167-231)||(27272580-27272644)
chr4 (167-227)||(53469713-53469773)
chr4 (167-231)||(29235177-29235242)
chr4 (162-227)||(13816947-13817012)
chr4 (169-223)||(21206361-21206415)
chr4 (169-264)||(32015174-32015265)
chr4 (148-231)||(53472598-53472679)
[»] chr7 (4 HSPs)
chr7 (143-259)||(7961762-7961874)
chr7 (148-258)||(11269947-11270053)
chr7 (150-217)||(1103150-1103217)
chr7 (162-229)||(1716687-1716754)
[»] chr1 (5 HSPs)
chr1 (143-231)||(22827083-22827171)
chr1 (143-231)||(22840954-22841042)
chr1 (173-231)||(22826688-22826746)
chr1 (150-231)||(24284815-24284896)
chr1 (167-231)||(24272756-24272820)
[»] chr6 (12 HSPs)
chr6 (143-231)||(13558031-13558119)
chr6 (146-259)||(2921874-2921983)
chr6 (172-231)||(13556060-13556119)
chr6 (143-230)||(2923215-2923303)
chr6 (148-225)||(11678830-11678907)
chr6 (143-258)||(27340638-27340747)
chr6 (143-258)||(27401378-27401487)
chr6 (148-229)||(14721699-14721779)
chr6 (167-225)||(11677131-11677189)
chr6 (167-216)||(16403533-16403581)
chr6 (167-228)||(16910155-16910216)
chr6 (170-231)||(22880025-22880086)
[»] chr2 (5 HSPs)
chr2 (153-231)||(10128496-10128574)
chr2 (148-231)||(8761228-8761312)
chr2 (148-231)||(37965536-37965620)
chr2 (145-205)||(15140795-15140855)
chr2 (170-227)||(25550091-25550147)
[»] chr3 (3 HSPs)
chr3 (148-259)||(25889614-25889721)
chr3 (169-231)||(31141415-31141477)
chr3 (173-227)||(30046435-30046489)
[»] chr5 (4 HSPs)
chr5 (148-230)||(32796351-32796433)
chr5 (167-259)||(19670679-19670767)
chr5 (156-229)||(26896578-26896651)
chr5 (148-258)||(32795563-32795669)
[»] scaffold0007 (1 HSPs)
scaffold0007 (167-231)||(260221-260285)
[»] chr8 (1 HSPs)
chr8 (169-223)||(33897221-33897275)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 10395817 - 10396063
Alignment:
Q  11 cagagatggtgccatttctcttggtgaaatgtgtcatacattccttgagattcatgatgtgagcccttgttttgcttgcatacannnnnnnatagtttcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||    
T  10395817 cagagatggtgccatttctcttggtgaaatgtgtcatacattccttgagattcatgatgtgagcccttgttttacttgcatacattttttgatagtttcc 10395916  T
Q  111 taagcttgtttgaaactgttgaaatatgtcttgaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttg 210  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||||||||||||||| | || |||||||||||||||||||    
T  10395917 taagcttgtttgaaactgtt-aaatatgtcttgaattatgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttg 10396015  T
Q  211 tgtgttagtatttcttgcacccatatatagttagtgggttatgctatagatg 262  Q
    |||||||||||||||||    |||  ||||||||||||||||||||||||||    
T  10396016 tgtgttagtatttcttg----catcaatagttagtgggttatgctatagatg 10396063  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 27272580 - 27272644
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  27272580 atgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 27272644  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 53469773 - 53469713
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  53469773 atgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttg 53469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 29235242 - 29235177
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagt-atttcttgcacc 231  Q
    ||||| ||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  29235242 atgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcacc 29235177  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 13816947 - 13817012
Alignment:
Q  162 agaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    |||| |||||||||||||| |||| |||||||||||||||||  |||| ||||||| |||||||||    
T  13816947 agaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttattatttcttg 13817012  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 21206361 - 21206415
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtattt 223  Q
    |||||||||| |||||  ||||||||||||||||||||| ||||| |||||||||    
T  21206361 gaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattt 21206415  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 32015174 - 32015265
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgggttatgctatagatgat 264  Q
    ||||| ||||||||||| ||||  | ||||||||| |  ||||||||||||||||||||||||     |||||||||||||| |||||||| ||||    
T  32015174 gaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcacc----aatagttagtgggttttgctatagctgat 32015265  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 53472679 - 53472598
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||| |||||| ||| || | ||||||||||||||||| |||  ||||||||||||||  ||||||||||||||||| ||||||    
T  53472679 atgttccacatcggataatacgaagaaatatgcaaagacttgc-catataaataaaagt-ttgtgtgttagtatttcatgcacc 53472598  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 7961762 - 7961874
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 242  Q
    |||||||||||||||| | | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  7961762 gaattatgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcacc----aatagtt 7961857  T
Q  243 agtgggttatgctatag 259  Q
    |||||||| ||||||||    
T  7961858 agtgggttttgctatag 7961874  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 11269947 - 11270053
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 247  Q
    ||||||||||| ||| || ||||||||||||  |||  |||||||||||||||||||||||||||||||||||||  |||||||     |||||||||||    
T  11269947 atgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcacc----aatagttagtgg 11270042  T
Q  248 gttatgctata 258  Q
    ||| |||||||    
T  11270043 gttttgctata 11270053  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 1103150 - 1103217
Alignment:
Q  150 gtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgtta 217  Q
    ||||||||| ||| || ||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  1103150 gtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtta 1103217  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1716754 - 1716687
Alignment:
Q  162 agaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 229  Q
    |||| ||||| ||||||| ||||| |||  |||||||||||| | ||||||||||| |||||||||||    
T  1716754 agaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgca 1716687  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 22827171 - 22827083
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  22827171 gaattatgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcacc 22827083  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 22840954 - 22841042
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||| ||| || ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  22840954 gaattatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcacc 22841042  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 22826746 - 22826688
Alignment:
Q  173 aaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||| |||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcacc 22826688  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 24284815 - 24284896
Alignment:
Q  150 gtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||  ||||| ||||| ||||||||||| ||||||  ||||||||||| || |||||||||| |||||||||||||    
T  24284815 gtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcacc 24284896  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 24272756 - 24272820
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    ||||||||||||||||||| |||   ||||| ||||| |||||||||||||||||||||||||||    
T  24272756 atgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcacc 24272820  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 13558119 - 13558031
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||    
T  13558119 gaattatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcacc 13558031  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 2921983 - 2921874
Alignment:
Q  146 ttatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagt 245  Q
    ||||||| ||||| ||| || |||||||||||||||| || ||||| ||||||||||||| ||| |||||||||||||||||||||     |||||||||    
T  2921983 ttatgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcacc----aatagttagt 2921888  T
Q  246 gggttatgctatag 259  Q
    ||||| ||||||||    
T  2921887 gggttttgctatag 2921874  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 13556119 - 13556060
Alignment:
Q  172 gaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 13556060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 2923303 - 2923215
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaa-gatttggtcatataaataaaagccttgtgtgttagtatttcttgcac 230  Q
    ||||||| |||||||| ||| || ||||||||||||||||| |  ||||||||||||||||||| |||||||||||||| |||||||||    
T  2923303 gaattatttcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcac 2923215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 11678830 - 11678907
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttct 225  Q
    ||||||||||| ||| || ||||||||||||||||||  |||||||| |||||||||  |||||||||||||||||||    
T  11678830 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttct 11678907  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 27340747 - 27340638
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 242  Q
    |||| ||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||| |  ||||||||||||| ||||| |||     ||||||    
T  27340747 gaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtacc----aatagtt 27340654  T
Q  243 agtgggttatgctata 258  Q
    |||||||| |||||||    
T  27340653 agtgggttttgctata 27340638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 27401487 - 27401378
Alignment:
Q  143 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 242  Q
    |||| ||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||| |  ||||||||||||| ||||| |||     ||||||    
T  27401487 gaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtacc----aatagtt 27401394  T
Q  243 agtgggttatgctata 258  Q
    |||||||| |||||||    
T  27401393 agtgggttttgctata 27401378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 14721699 - 14721779
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 229  Q
    ||||||||||| |||||| |  ||||||||||||||||||||| | |||||||||||||||||| | | |||||||||||||    
T  14721699 atgtcccacatcggagaatagaaagaaatatgcaaagatttgg-cctataaataaaagccttgtttataagtatttcttgca 14721779  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 11677131 - 11677189
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttct 225  Q
    ||||||||||||||||||  ||| ||||||||||||||  |||||||||||||||||||    
T  11677131 atgaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttct 11677189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 16403533 - 16403581
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgtt 216  Q
    |||||||||||||||| || || |||||||||||||||| ||||||||||    
T  16403533 atgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtt 16403581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 16910216 - 16910155
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgc 228  Q
    |||||| |||||||||||| ||||   ||||||||||||  |||||||||||||||| ||||    
T  16910216 atgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgc 16910155  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 22880086 - 22880025
Alignment:
Q  170 aagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||  ||| | ||||||||||||||||| |  |||||||||| |||||||||||||    
T  22880086 aagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttgcacc 22880025  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 10128496 - 10128574
Alignment:
Q  153 ccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||| |||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  10128496 ccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 10128574  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 8761312 - 8761228
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaaga-tttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||  || || ||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  8761312 atgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 8761228  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 37965620 - 37965536
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaag-ccttgtgtgttagtatttcttgcacc 231  Q
    ||||| ||||| ||| || ||||||||||||||||||| ||||  ||||||||||||| | ||||||||||||||||||||||||    
T  37965620 atgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcacc 37965536  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 15140795 - 15140855
Alignment:
Q  145 attatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaag 205  Q
    |||||||||||||| ||  || ||||||||||||| |||||||||||||||||||||||||    
T  15140795 attatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaag 15140855  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 25550091 - 25550147
Alignment:
Q  170 aagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    |||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtg-tagtatttcttg 25550147  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 25889614 - 25889721
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 247  Q
    ||||||||||| ||| || |||||||  ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||     |||||||||||    
T  25889614 atgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcacc----aatagttagtgg 25889709  T
Q  248 gttatgctatag 259  Q
    ||| ||||||||    
T  25889710 gttttgctatag 25889721  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 31141415 - 31141477
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    |||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||    
T  31141415 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacacc 31141477  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 30046435 - 30046489
Alignment:
Q  173 aaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 227  Q
    ||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttg 30046489  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 32796433 - 32796351
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcac 230  Q
    |||||||| || ||| || ||||||||||||||||||  || ||||||||||||||||||||||||||||||||| |||||||    
T  32796433 atgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcac 32796351  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 19670679 - 19670767
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgggttatgctatag 259  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||| |||| |||     |||||||||||||| ||||||||    
T  19670679 atgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtacc----aatagttagtgggttttgctatag 19670767  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 26896578 - 26896651
Alignment:
Q  156 cattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 229  Q
    |||||||||| | ||||||||||||||||| |||| ||||||||||||  | ||||||||||||||||||||||    
T  26896578 cattggagaataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 32795669 - 32795563
Alignment:
Q  148 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 247  Q
    ||||||||||| ||| || ||||||||||||||||||| || ||||||| |||||||| |||| |||| |||||| |||| |||     |||||||||||    
T  32795669 atgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtacc----aatagttagtgg 32795574  T
Q  248 gttatgctata 258  Q
    ||| |||||||    
T  32795573 gttttgctata 32795563  T

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Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 260285 - 260221
Alignment:
Q  167 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 231  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||    
T  260285 atgaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcacc 260221  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 33897221 - 33897275
Alignment:
Q  169 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtattt 223  Q
    ||||||||||| |||||||||   ||||||||||||| |||||||||||||||||    
T  33897221 gaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattt 33897275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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