View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_27 (Length: 267)
Name: NF17550_low_27
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7617516 - 7617741
Alignment:
| Q |
1 |
aaaaaattaaaagttagttaatttattttgaagtataaactaaatataattagcaaagtgcactgtttttccatagtgtaaagccaatttcgctgctact |
100 |
Q |
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| T |
7617516 |
aaaaaattaaaagttagttaatttattttgaagtataaactaaatataattagcaaagtgcactgtttttccatagtgtaaagccaatttcgctgctact |
7617615 |
T |
|
| Q |
101 |
ttccggnnnnnnnnncactttaaagacagaacagaagcttataaaagcacaccctattggcttcacacattcattgaaatcacatgcatcattgatttct |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7617616 |
ttccggttttttt--cactttaaagacagaacagaagcttataaaagcacaccctattggcttcacacattcattgaaatcacatgcatcattgatttct |
7617713 |
T |
|
| Q |
201 |
tatatgcagctacacataacaattacca |
228 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
7617714 |
tatatgcaactacacataacaattacca |
7617741 |
T |
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