View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17550_low_3 (Length: 575)
Name: NF17550_low_3
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 23 - 559
Target Start/End: Original strand, 7754186 - 7754731
Alignment:
| Q |
23 |
actagtttcaagttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc------catgcacccaaaccataaa-tcg |
115 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
7754186 |
actaatttcaagttatatttacaattcttactctaattctttattcaaaataagagactctctttacctccaattatcatgcacccaaactataaaatcg |
7754285 |
T |
|
| Q |
116 |
gatatccctaaatcnnnnnnnnnntcttattctttttcaaacatgattaaacaattatttttcacaatcagcagcaatctgataaaattatgaaaagaca |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7754286 |
gatatccctaaatcaaaaaaaat-tcttattctttttcaaacatgattaaacaactatttttcacaatcagcagcaatctgataaaatcatgaaaagaca |
7754384 |
T |
|
| Q |
216 |
ccatcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7754385 |
ccatcaataaaatatctacaagcaccaagctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaat |
7754484 |
T |
|
| Q |
316 |
tacaagccacaaaaacaacaagaatgcatcgcaaattttaattgtatacagcgtaatggagtaatggagttttatatgttggaaatgtgctgagcaatat |
415 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7754485 |
tacaagccacaaaagcaacaagaatgcatcgcaaattttaattgtatacagcgtaatggagtaatggagttttatatgttggaaatgtgctgagcaatat |
7754584 |
T |
|
| Q |
416 |
ccctcttaaattggttaat---ttgttattcgttgtgttttgtactgcgtaaattcaaagaactcattttttaatgggaattcaaagatctcatgtttct |
512 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7754585 |
ccctcttaaattggttaatttgttgttattcattgtgttttgtactgcgtaaattcaaagaactcattttttaatgggaattcaaagatctcatgtttct |
7754684 |
T |
|
| Q |
513 |
taatttatgtgtattaaaaggtcactatcactaattgaacttagaaa |
559 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7754685 |
taatttatgtgtattaaaaggtcactatctctaattgaacttagaaa |
7754731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 498
Target Start/End: Complemental strand, 29387859 - 29387825
Alignment:
| Q |
464 |
aattcaaagaactcattttttaatgggaattcaaa |
498 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
29387859 |
aattcaaataactcattttttaatgggaattcaaa |
29387825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 218 - 559
Target Start/End: Original strand, 43552423 - 43552764
Alignment:
| Q |
218 |
atcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaatta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43552423 |
atcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaatta |
43552522 |
T |
|
| Q |
318 |
caagccacaaaaacaacaagaatgcatcgcaaattttaattgtatacagcgtaatggagtaatggagttttatatgttggaaatgtgctgagcaatatcc |
417 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43552523 |
caagccacaaaagcaacaagaatgcattgcaaattttaattgtatacagcgtaatggagtaatggagtcttatatgttggaaatgtgctgagcaatatcc |
43552622 |
T |
|
| Q |
418 |
ctcttaaattggttaatttgttattcgttgtgttttgtactgcgtaaattcaaagaactcattttttaatgggaattcaaagatctcatgtttcttaatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43552623 |
ctcttaaattggttaatttgttattcattgtgttttgtactgcgtaaattcaaagaactcattttttaatgggaattcaaagatctcatgtttcttaatt |
43552722 |
T |
|
| Q |
518 |
tatgtgtattaaaaggtcactatcactaattgaacttagaaa |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43552723 |
tatgtgtattaaaaggtcactatcactaattgaacttagaaa |
43552764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 43552250 - 43552426
Alignment:
| Q |
15 |
tatccacaactagtttcaagttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc------catgcacccaaacca |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| | |||||| |||||||| |
|
|
| T |
43552250 |
tatccacaagtagtttcaagttatatttacaattcccactctaattctttgttcaaaataagatactttctttaccttcaattatcatgcatccaaacca |
43552349 |
T |
|
| Q |
109 |
t-aaatcggatatccctaaatcnnnnnnnnnntcttattctttttcaaacatgattaaacaattatttttcacaatca |
185 |
Q |
| |
|
| |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43552350 |
taaaatcggatatccctagatc-aaacaaaattcttattctttttcaaacatgattaaacaactatttttcacaatca |
43552426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 205 - 362
Target Start/End: Original strand, 27918106 - 27918257
Alignment:
| Q |
205 |
atgaaaagacaccatcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaa |
304 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27918106 |
atgaaaatacaccatcaataaaatctctacaagcaccaatctaactcctttaaaattgcttgaacaaacttctaatcaaccaactataatacagaa---- |
27918201 |
T |
|
| Q |
305 |
agctgaagaattacaagccacaaaaacaacaagaatgcatcgcaaattttaattgtat |
362 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27918202 |
--ctgaagaattacaagccacaaaagcaacaagaatgcatcgcaaattttaattgtat |
27918257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 33064348 - 33064233
Alignment:
| Q |
212 |
gacaccatcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaa |
311 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
33064348 |
gacaccatcaataaaatctctacaagcaccaatctaactcctttaaaattgtttgaacagacttgtcatcaaccaactataatacagaaggaaaactgaa |
33064249 |
T |
|
| Q |
312 |
gaattacaagccacaa |
327 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
33064248 |
gaattacaagcaacaa |
33064233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 238 - 362
Target Start/End: Complemental strand, 709756 - 709635
Alignment:
| Q |
238 |
caccgatctaactcctttaaaattgcttgaacagacttctaatcaaccaactataatacagaaggaaagctgaagaattacaagccacaaaaacaacaag |
337 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
709756 |
caccaatctaacttctttaaaattatttgaacaaacttctaatcaaccaactata---cagaaggaaaattgaagaattacaagccacaaaagcaacaag |
709660 |
T |
|
| Q |
338 |
aatgcatcgcaaattttaattgtat |
362 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
709659 |
aatgcatcacaaattttaattgtat |
709635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 10966272 - 10966214
Alignment:
| Q |
35 |
ttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc |
93 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
10966272 |
ttatctttacaattcctactctaattctttgttcaaaatgagatactctcttttcctcc |
10966214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 10965720 - 10965642
Alignment:
| Q |
216 |
ccatcaataaaatatctacaagcaccgatctaactcctttaaaattgcttgaacagac-ttctaatcaaccaactataa |
293 |
Q |
| |
|
||||||| ||||| ||| |||||||| ||| ||||| ||||||||||||||||||| | ||||| |||| ||||||||| |
|
|
| T |
10965720 |
ccatcaacaaaatctctccaagcaccaatccaactcatttaaaattgcttgaacaggctttctattcaaacaactataa |
10965642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 10965634 - 10965587
Alignment:
| Q |
315 |
ttacaagccacaaaaacaacaagaatgcatcgcaaattttaattgtat |
362 |
Q |
| |
|
||||| ||||| ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10965634 |
ttacaggccacgaaagcaataagaatgcatcgcaaattttaattgtat |
10965587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 38406989 - 38406921
Alignment:
| Q |
25 |
tagtttcaagttatatttacgattcttactctaattctttgttcaaaataagatactctctttacctcc |
93 |
Q |
| |
|
||||||| | |||| ||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
38406989 |
tagtttccacttatctttacaattcgtactctaattctttgttcaaaatgagatactctttttacctcc |
38406921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University