View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_30 (Length: 242)
Name: NF17550_low_30
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 42158693 - 42158904
Alignment:
| Q |
14 |
aagcaaaggtccacgaaaacgaaatgtatggtgaagatcttcaagtaacttaacgagtagagagcgttgattgtcaaggagatctaagattgaatggttt |
113 |
Q |
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| T |
42158693 |
aagccaaggtccacgaaaacgaaatgtatggtgaagatcttcaagtaacttaacgagtagaaagcgttgattgtcaaggagatctaagattgaatggttc |
42158792 |
T |
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| Q |
114 |
ttgagaagaagtaaaagttccgccaaggttgtgtatgccaagcccttcacttcaggagacttgaaagtaggcagagttacttcggagccatgagaagcga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42158793 |
ttgagaagaagtaaaagttccgccaaggttgtgtatgccaagcccttcacttcaggagacttgaaagtaggcagagttatttcggagccatgagaagcga |
42158892 |
T |
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| Q |
214 |
tgaagtttgaaa |
225 |
Q |
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| T |
42158893 |
tgaagtttgaaa |
42158904 |
T |
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